miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12561 3' -57.1 NC_003345.1 + 34299 0.67 0.694303
Target:  5'- cGCuuGaCCGugUUCCCC-UUCCCGAa- -3'
miRNA:   3'- -CGu-CaGGCugAAGGGGuAGGGGCUcu -5'
12561 3' -57.1 NC_003345.1 + 32281 0.67 0.662961
Target:  5'- uGUAGUCaacguCGGCUUCCCaCGaCUUCGAGAa -3'
miRNA:   3'- -CGUCAG-----GCUGAAGGG-GUaGGGGCUCU- -5'
12561 3' -57.1 NC_003345.1 + 6437 0.67 0.662961
Target:  5'- aCAGUCa-GCUUCCCCcacuucUCCCCGGu- -3'
miRNA:   3'- cGUCAGgcUGAAGGGGu-----AGGGGCUcu -5'
12561 3' -57.1 NC_003345.1 + 11126 0.67 0.641919
Target:  5'- -gAGUCCGugUcCCUCGUCCacaaucaCGAGGu -3'
miRNA:   3'- cgUCAGGCugAaGGGGUAGGg------GCUCU- -5'
12561 3' -57.1 NC_003345.1 + 54156 0.68 0.631381
Target:  5'- -gAGUCUGAac-CUCCGUCCCCGcuGGAa -3'
miRNA:   3'- cgUCAGGCUgaaGGGGUAGGGGC--UCU- -5'
12561 3' -57.1 NC_003345.1 + 46217 0.68 0.599805
Target:  5'- -gAGUCCGAUUUUCCgCAUCCCacCGAc- -3'
miRNA:   3'- cgUCAGGCUGAAGGG-GUAGGG--GCUcu -5'
12561 3' -57.1 NC_003345.1 + 14545 0.68 0.589319
Target:  5'- uGCGaccCCGACUaUCCCAUCCUCGaAGAc -3'
miRNA:   3'- -CGUca-GGCUGAaGGGGUAGGGGC-UCU- -5'
12561 3' -57.1 NC_003345.1 + 77206 0.69 0.527347
Target:  5'- aGUAG-CCGACcccUCCCCAUccgaCCCCGAc- -3'
miRNA:   3'- -CGUCaGGCUGa--AGGGGUA----GGGGCUcu -5'
12561 3' -57.1 NC_003345.1 + 64440 0.7 0.517237
Target:  5'- uUAGUCCGGCUUguaCCCCAUCgguuUCaCGGGAa -3'
miRNA:   3'- cGUCAGGCUGAA---GGGGUAG----GG-GCUCU- -5'
12561 3' -57.1 NC_003345.1 + 4755 0.7 0.507205
Target:  5'- ----cCCGACUUCCaCGaCCCCGAGAu -3'
miRNA:   3'- cgucaGGCUGAAGGgGUaGGGGCUCU- -5'
12561 3' -57.1 NC_003345.1 + 11521 0.71 0.439583
Target:  5'- aGCcGUCCGAUg--CCguUCCCCGAGGa -3'
miRNA:   3'- -CGuCAGGCUGaagGGguAGGGGCUCU- -5'
12561 3' -57.1 NC_003345.1 + 6124 0.71 0.430343
Target:  5'- uGCcGUCCGGgUUUCCCAuccagUCCUCGGGGu -3'
miRNA:   3'- -CGuCAGGCUgAAGGGGU-----AGGGGCUCU- -5'
12561 3' -57.1 NC_003345.1 + 46358 1.11 0.000868
Target:  5'- cGCAGUCCGACUUCCCCAUCCCCGAGAu -3'
miRNA:   3'- -CGUCAGGCUGAAGGGGUAGGGGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.