miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12561 5' -53.3 NC_003345.1 + 66503 0.66 0.919864
Target:  5'- -uCGUCGGUGaGGAUuuuagacggugGUGGGAAGUUGu -3'
miRNA:   3'- gcGCAGCCAC-CCUA-----------CGCCUUUUAGCc -5'
12561 5' -53.3 NC_003345.1 + 22181 0.66 0.901028
Target:  5'- uGgGgCGGUGGGAgaaGCacguccGAAAGUCGGa -3'
miRNA:   3'- gCgCaGCCACCCUa--CGc-----CUUUUAGCC- -5'
12561 5' -53.3 NC_003345.1 + 4863 0.67 0.864606
Target:  5'- uGCGUCGuucaucucGGGGUcGUGG-AAGUCGGg -3'
miRNA:   3'- gCGCAGCca------CCCUA-CGCCuUUUAGCC- -5'
12561 5' -53.3 NC_003345.1 + 23267 0.67 0.85661
Target:  5'- -aCGUCGGcGGGAgUGauuaGGAGAGUCGc -3'
miRNA:   3'- gcGCAGCCaCCCU-ACg---CCUUUUAGCc -5'
12561 5' -53.3 NC_003345.1 + 44345 0.68 0.848392
Target:  5'- aCGUGaaGGUGGGAaGUGGGAggggcgcgacGAUUGGu -3'
miRNA:   3'- -GCGCagCCACCCUaCGCCUU----------UUAGCC- -5'
12561 5' -53.3 NC_003345.1 + 7925 0.69 0.785325
Target:  5'- -uCGUUGGUGGGAUgGCGGcg---CGGc -3'
miRNA:   3'- gcGCAGCCACCCUA-CGCCuuuuaGCC- -5'
12561 5' -53.3 NC_003345.1 + 8595 0.69 0.785325
Target:  5'- aGCGUUcGUGGG-UGUGGAGAGcuucgagauuccUCGGc -3'
miRNA:   3'- gCGCAGcCACCCuACGCCUUUU------------AGCC- -5'
12561 5' -53.3 NC_003345.1 + 50808 0.69 0.764813
Target:  5'- cCGCGUCGGUucugguucuaacgGcGGcgGUGGAAAcggCGGg -3'
miRNA:   3'- -GCGCAGCCA-------------C-CCuaCGCCUUUua-GCC- -5'
12561 5' -53.3 NC_003345.1 + 67261 0.7 0.745761
Target:  5'- aGCGaCGGUGGGAgugGUGGGAA--CGa -3'
miRNA:   3'- gCGCaGCCACCCUa--CGCCUUUuaGCc -5'
12561 5' -53.3 NC_003345.1 + 15158 0.7 0.714906
Target:  5'- aGgGUCGGcaaGGAcauUGCGGAAGAccUCGGg -3'
miRNA:   3'- gCgCAGCCac-CCU---ACGCCUUUU--AGCC- -5'
12561 5' -53.3 NC_003345.1 + 60743 0.7 0.714906
Target:  5'- uCGCGuUCGGgcgcgGGGAugaguaUGCGGGAAAUucuggcCGGa -3'
miRNA:   3'- -GCGC-AGCCa----CCCU------ACGCCUUUUA------GCC- -5'
12561 5' -53.3 NC_003345.1 + 71022 0.71 0.686533
Target:  5'- aGCGUCGGUcgaaaccggcuucGGGcugucgucguccgGUGGGGAAUCGGu -3'
miRNA:   3'- gCGCAGCCA-------------CCCua-----------CGCCUUUUAGCC- -5'
12561 5' -53.3 NC_003345.1 + 56095 0.71 0.662072
Target:  5'- uCGuCGUCGGUGGuGGggGCGGAGGuggUGGc -3'
miRNA:   3'- -GC-GCAGCCACC-CUa-CGCCUUUua-GCC- -5'
12561 5' -53.3 NC_003345.1 + 18679 0.72 0.640683
Target:  5'- uGCgGUCGGUGGGAUGgcaUGGGAGc-CGGu -3'
miRNA:   3'- gCG-CAGCCACCCUAC---GCCUUUuaGCC- -5'
12561 5' -53.3 NC_003345.1 + 46242 0.8 0.253102
Target:  5'- aCGCGcUCGGUaaucucgGGGAUG-GGGAAGUCGGa -3'
miRNA:   3'- -GCGC-AGCCA-------CCCUACgCCUUUUAGCC- -5'
12561 5' -53.3 NC_003345.1 + 46324 1.12 0.002072
Target:  5'- gCGCGUCGGUGGGAUGCGGAAAAUCGGa -3'
miRNA:   3'- -GCGCAGCCACCCUACGCCUUUUAGCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.