Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12561 | 5' | -53.3 | NC_003345.1 | + | 71022 | 0.71 | 0.686533 |
Target: 5'- aGCGUCGGUcgaaaccggcuucGGGcugucgucguccgGUGGGGAAUCGGu -3' miRNA: 3'- gCGCAGCCA-------------CCCua-----------CGCCUUUUAGCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 67261 | 0.7 | 0.745761 |
Target: 5'- aGCGaCGGUGGGAgugGUGGGAA--CGa -3' miRNA: 3'- gCGCaGCCACCCUa--CGCCUUUuaGCc -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 66503 | 0.66 | 0.919864 |
Target: 5'- -uCGUCGGUGaGGAUuuuagacggugGUGGGAAGUUGu -3' miRNA: 3'- gcGCAGCCAC-CCUA-----------CGCCUUUUAGCc -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 60743 | 0.7 | 0.714906 |
Target: 5'- uCGCGuUCGGgcgcgGGGAugaguaUGCGGGAAAUucuggcCGGa -3' miRNA: 3'- -GCGC-AGCCa----CCCU------ACGCCUUUUA------GCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 56095 | 0.71 | 0.662072 |
Target: 5'- uCGuCGUCGGUGGuGGggGCGGAGGuggUGGc -3' miRNA: 3'- -GC-GCAGCCACC-CUa-CGCCUUUua-GCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 50808 | 0.69 | 0.764813 |
Target: 5'- cCGCGUCGGUucugguucuaacgGcGGcgGUGGAAAcggCGGg -3' miRNA: 3'- -GCGCAGCCA-------------C-CCuaCGCCUUUua-GCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 46324 | 1.12 | 0.002072 |
Target: 5'- gCGCGUCGGUGGGAUGCGGAAAAUCGGa -3' miRNA: 3'- -GCGCAGCCACCCUACGCCUUUUAGCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 46242 | 0.8 | 0.253102 |
Target: 5'- aCGCGcUCGGUaaucucgGGGAUG-GGGAAGUCGGa -3' miRNA: 3'- -GCGC-AGCCA-------CCCUACgCCUUUUAGCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 44345 | 0.68 | 0.848392 |
Target: 5'- aCGUGaaGGUGGGAaGUGGGAggggcgcgacGAUUGGu -3' miRNA: 3'- -GCGCagCCACCCUaCGCCUU----------UUAGCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 23267 | 0.67 | 0.85661 |
Target: 5'- -aCGUCGGcGGGAgUGauuaGGAGAGUCGc -3' miRNA: 3'- gcGCAGCCaCCCU-ACg---CCUUUUAGCc -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 22181 | 0.66 | 0.901028 |
Target: 5'- uGgGgCGGUGGGAgaaGCacguccGAAAGUCGGa -3' miRNA: 3'- gCgCaGCCACCCUa--CGc-----CUUUUAGCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 18679 | 0.72 | 0.640683 |
Target: 5'- uGCgGUCGGUGGGAUGgcaUGGGAGc-CGGu -3' miRNA: 3'- gCG-CAGCCACCCUAC---GCCUUUuaGCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 15158 | 0.7 | 0.714906 |
Target: 5'- aGgGUCGGcaaGGAcauUGCGGAAGAccUCGGg -3' miRNA: 3'- gCgCAGCCac-CCU---ACGCCUUUU--AGCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 8595 | 0.69 | 0.785325 |
Target: 5'- aGCGUUcGUGGG-UGUGGAGAGcuucgagauuccUCGGc -3' miRNA: 3'- gCGCAGcCACCCuACGCCUUUU------------AGCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 7925 | 0.69 | 0.785325 |
Target: 5'- -uCGUUGGUGGGAUgGCGGcg---CGGc -3' miRNA: 3'- gcGCAGCCACCCUA-CGCCuuuuaGCC- -5' |
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12561 | 5' | -53.3 | NC_003345.1 | + | 4863 | 0.67 | 0.864606 |
Target: 5'- uGCGUCGuucaucucGGGGUcGUGG-AAGUCGGg -3' miRNA: 3'- gCGCAGCca------CCCUA-CGCCuUUUAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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