miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12562	3'	-51.2	NC_003345.1	+	55712	0.67	0.931717
	Target:  5'- aCUCGUcCGGCGguggUGGGGcgGGUGaaCCCGg -3' miRNA:   3'- -GAGCAaGCUGCa---ACUCC--UCAUa-GGGC- -5'
12562	3'	-51.2	NC_003345.1	+	54571	0.68	0.920309
	Target:  5'- gCUCuUUCGACGgcgauacUGAGGAGgaaAUCCuCGa -3' miRNA:   3'- -GAGcAAGCUGCa------ACUCCUCa--UAGG-GC- -5'
12562	3'	-51.2	NC_003345.1	+	13362	0.68	0.907818
	Target:  5'- cCUUGUUCGugauacagcuCGUaGA-GAGUAUCCCGg -3' miRNA:   3'- -GAGCAAGCu---------GCAaCUcCUCAUAGGGC- -5'
12562	3'	-51.2	NC_003345.1	+	2486	0.68	0.901172
	Target:  5'- ---cUUCGAgGUc-GGGAGUGUCCCGa -3' miRNA:   3'- gagcAAGCUgCAacUCCUCAUAGGGC- -5'
12562	3'	-51.2	NC_003345.1	+	71850	0.68	0.89426
	Target:  5'- cCUCGcUgGACGaguUUGAcGGAGUGguUCCCGa -3' miRNA:   3'- -GAGCaAgCUGC---AACU-CCUCAU--AGGGC- -5'
12562	3'	-51.2	NC_003345.1	+	71576	0.7	0.838909
	Target:  5'- aCUgGUguagagUCGGCGggUGGGGAGgucaaGUCCCGa -3' miRNA:   3'- -GAgCA------AGCUGCa-ACUCCUCa----UAGGGC- -5'
12562	3'	-51.2	NC_003345.1	+	46652	1.11	0.003717
	Target:  5'- aCUCGUUCGACGUUGAGGAGUAUCCCGa -3' miRNA:   3'- -GAGCAAGCUGCAACUCCUCAUAGGGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home