miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12563 3' -56.1 NC_003345.1 + 30590 0.66 0.757555
Target:  5'- cCUCuCGGUUCcgaGUCGGACu-CCCGGCu -3'
miRNA:   3'- -GAG-GCCAAGua-CGGCUUGucGGGCUG- -5'
12563 3' -56.1 NC_003345.1 + 77577 0.67 0.706283
Target:  5'- ---aGGggCAgggGCCGAcCGGCCCGAg -3'
miRNA:   3'- gaggCCaaGUa--CGGCUuGUCGGGCUg -5'
12563 3' -56.1 NC_003345.1 + 290 0.67 0.706283
Target:  5'- ---aGGggCAgggGCCGAcCGGCCCGAg -3'
miRNA:   3'- gaggCCaaGUa--CGGCUuGUCGGGCUg -5'
12563 3' -56.1 NC_003345.1 + 8076 0.68 0.663966
Target:  5'- -cCCGGUUCAUccgguguggaagGCCGGuCAGuugaccgacCCCGACg -3'
miRNA:   3'- gaGGCCAAGUA------------CGGCUuGUC---------GGGCUG- -5'
12563 3' -56.1 NC_003345.1 + 1096 0.68 0.636178
Target:  5'- -aCCGGcccUUAgggGCCGGggcggaaaacaggggGCGGCCCGGCg -3'
miRNA:   3'- gaGGCCa--AGUa--CGGCU---------------UGUCGGGCUG- -5'
12563 3' -56.1 NC_003345.1 + 58248 0.69 0.599827
Target:  5'- -cCCGGcg-AUGCuuaCGAACAGCUCGACa -3'
miRNA:   3'- gaGGCCaagUACG---GCUUGUCGGGCUG- -5'
12563 3' -56.1 NC_003345.1 + 33174 0.7 0.547
Target:  5'- cCUCCGGcggguUGgCGGuCGGCCCGGCg -3'
miRNA:   3'- -GAGGCCaagu-ACgGCUuGUCGGGCUG- -5'
12563 3' -56.1 NC_003345.1 + 73094 0.71 0.466037
Target:  5'- cCUCCGGUUCAgGUgGAACAgacggaggaGCgCGACg -3'
miRNA:   3'- -GAGGCCAAGUaCGgCUUGU---------CGgGCUG- -5'
12563 3' -56.1 NC_003345.1 + 62951 0.71 0.446759
Target:  5'- -gCCGGgUCGagGCCGGgaACAGCgCCGACg -3'
miRNA:   3'- gaGGCCaAGUa-CGGCU--UGUCG-GGCUG- -5'
12563 3' -56.1 NC_003345.1 + 32045 0.73 0.357587
Target:  5'- gCUUCGGUUCGc-CCGAACAGUuuGGCu -3'
miRNA:   3'- -GAGGCCAAGUacGGCUUGUCGggCUG- -5'
12563 3' -56.1 NC_003345.1 + 808 0.76 0.255072
Target:  5'- uCUCCGGUUCcgGCCccuguuACGGgCCGACc -3'
miRNA:   3'- -GAGGCCAAGuaCGGcu----UGUCgGGCUG- -5'
12563 3' -56.1 NC_003345.1 + 64650 0.76 0.242568
Target:  5'- uUCCGGUUCA--UCGGGCGGCuuGACg -3'
miRNA:   3'- gAGGCCAAGUacGGCUUGUCGggCUG- -5'
12563 3' -56.1 NC_003345.1 + 37593 0.77 0.22135
Target:  5'- -cCCGugaaGUUCAUGCCGGACugucacgggggacucGGCCCGGCg -3'
miRNA:   3'- gaGGC----CAAGUACGGCUUG---------------UCGGGCUG- -5'
12563 3' -56.1 NC_003345.1 + 47442 1.1 0.001072
Target:  5'- gCUCCGGUUCAUGCCGAACAGCCCGACg -3'
miRNA:   3'- -GAGGCCAAGUACGGCUUGUCGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.