Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12563 | 5' | -55.7 | NC_003345.1 | + | 47408 | 1.09 | 0.001363 |
Target: 5'- aACGCCGGGACGGACAUGAAUCAGCUCu -3' miRNA: 3'- -UGCGGCCCUGCCUGUACUUAGUCGAG- -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 26568 | 0.71 | 0.500692 |
Target: 5'- cCGuCCGGGgugguagcgGCGGAgGUGggUCGGCa- -3' miRNA: 3'- uGC-GGCCC---------UGCCUgUACuuAGUCGag -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 48676 | 0.69 | 0.584269 |
Target: 5'- -gGCCGGGGCGGuuCAUcGggUUAGUg- -3' miRNA: 3'- ugCGGCCCUGCCu-GUA-CuuAGUCGag -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 77314 | 0.69 | 0.605689 |
Target: 5'- -aGUCGGGGuCGGAUGgggagGggUCGGCUa -3' miRNA: 3'- ugCGGCCCU-GCCUGUa----CuuAGUCGAg -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 25588 | 0.69 | 0.614285 |
Target: 5'- -gGCCGGGugGGACuuccacaCGGUUCa -3' miRNA: 3'- ugCGGCCCugCCUGuacuua-GUCGAG- -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 62949 | 0.68 | 0.659463 |
Target: 5'- uCGCCGGGuCGaGGCcgGGAaCAGCg- -3' miRNA: 3'- uGCGGCCCuGC-CUGuaCUUaGUCGag -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 71017 | 0.67 | 0.702097 |
Target: 5'- cGCGCCGaGGAUGGugAgcugGuuUCGGUUg -3' miRNA: 3'- -UGCGGC-CCUGCCugUa---CuuAGUCGAg -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 56084 | 0.67 | 0.723065 |
Target: 5'- -gGUgGGGGCGGAgGUGGu--GGCUCu -3' miRNA: 3'- ugCGgCCCUGCCUgUACUuagUCGAG- -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 1109 | 0.67 | 0.723065 |
Target: 5'- -gGCCGGGGCGGAaaacagGGggCGGCcCg -3' miRNA: 3'- ugCGGCCCUGCCUgua---CUuaGUCGaG- -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 67560 | 0.67 | 0.723065 |
Target: 5'- -aGCgCGGGAUGGACA--AGUCuGCUa -3' miRNA: 3'- ugCG-GCCCUGCCUGUacUUAGuCGAg -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 28812 | 0.67 | 0.733424 |
Target: 5'- gAUGCCGGGAaccguUGcGGCGUGAagaagggcGUCGGCg- -3' miRNA: 3'- -UGCGGCCCU-----GC-CUGUACU--------UAGUCGag -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 54255 | 0.66 | 0.743686 |
Target: 5'- -aGCgGGGACGGAgGU---UCAGaCUCg -3' miRNA: 3'- ugCGgCCCUGCCUgUAcuuAGUC-GAG- -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 35806 | 0.66 | 0.762878 |
Target: 5'- -aGCUcaaagagGGGauGCGGGCGUG--UCAGCUCg -3' miRNA: 3'- ugCGG-------CCC--UGCCUGUACuuAGUCGAG- -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 68290 | 0.66 | 0.773782 |
Target: 5'- aACGCCcGGAuuuCGGAUAUGAauguagugucGUCAGUUg -3' miRNA: 3'- -UGCGGcCCU---GCCUGUACU----------UAGUCGAg -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 63938 | 0.66 | 0.780634 |
Target: 5'- -gGCCGuGGGaaacguuccaccCGGAUGUGAAcgaaauccggcuacUCAGCUCg -3' miRNA: 3'- ugCGGC-CCU------------GCCUGUACUU--------------AGUCGAG- -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 11932 | 0.66 | 0.783549 |
Target: 5'- aACGaCUGGGAuUGGuAUAUgGAGUCGGCUUc -3' miRNA: 3'- -UGC-GGCCCU-GCC-UGUA-CUUAGUCGAG- -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 68579 | 0.66 | 0.783549 |
Target: 5'- uCGCCacggaGGuACGG-CGUGGucAUCAGCUCa -3' miRNA: 3'- uGCGGc----CC-UGCCuGUACU--UAGUCGAG- -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 24533 | 0.66 | 0.793164 |
Target: 5'- aGCGCCGGGAUGuGGCGUau-UCGGa-- -3' miRNA: 3'- -UGCGGCCCUGC-CUGUAcuuAGUCgag -5' |
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12563 | 5' | -55.7 | NC_003345.1 | + | 20235 | 0.66 | 0.793164 |
Target: 5'- uCGCCgGGGACGGACuugccacgGAggucgaacacGUCGGC-Ca -3' miRNA: 3'- uGCGG-CCCUGCCUGua------CU----------UAGUCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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