Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12565 | 5' | -53.3 | NC_003345.1 | + | 54295 | 1.11 | 0.001937 |
Target: 5'- uCUCUCGGCAGAACGUAGCCGAGAUGGa -3' miRNA: 3'- -GAGAGCCGUCUUGCAUCGGCUCUACC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 52142 | 0.72 | 0.593972 |
Target: 5'- -aCUCGGCA-AACGguagAGCCGAGAuuacuucgagUGGg -3' miRNA: 3'- gaGAGCCGUcUUGCa---UCGGCUCU----------ACC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 61270 | 0.71 | 0.647953 |
Target: 5'- uUCcagCGGCAGAuauuCGaGGCCGAGAaGGu -3' miRNA: 3'- gAGa--GCCGUCUu---GCaUCGGCUCUaCC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 54194 | 0.7 | 0.680247 |
Target: 5'- aUCUCGGCu--ACGUucuGCCGAGAg-- -3' miRNA: 3'- gAGAGCCGucuUGCAu--CGGCUCUacc -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 65016 | 0.7 | 0.701573 |
Target: 5'- -aUUCGGCAGAACGUu-CCGAcuUGGg -3' miRNA: 3'- gaGAGCCGUCUUGCAucGGCUcuACC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 24581 | 0.69 | 0.7834 |
Target: 5'- cCUCggCGGCAGGAC---GCCGGGA-GGu -3' miRNA: 3'- -GAGa-GCCGUCUUGcauCGGCUCUaCC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 48821 | 0.68 | 0.802556 |
Target: 5'- aUCUCGGUGGAACGgaaucacCUGAauGAUGGg -3' miRNA: 3'- gAGAGCCGUCUUGCauc----GGCU--CUACC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 32107 | 0.68 | 0.821024 |
Target: 5'- -cCUCGGCAgGGACGUAGaaGuAGgcGGg -3' miRNA: 3'- gaGAGCCGU-CUUGCAUCggC-UCuaCC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 73522 | 0.67 | 0.847268 |
Target: 5'- --gUCGGCAGAACccGGCgGcGGUGGc -3' miRNA: 3'- gagAGCCGUCUUGcaUCGgCuCUACC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 27649 | 0.67 | 0.855592 |
Target: 5'- -aUUCGGCccgcuGACGUGGCUGAaauGAUGGc -3' miRNA: 3'- gaGAGCCGuc---UUGCAUCGGCU---CUACC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 12755 | 0.67 | 0.855592 |
Target: 5'- -aCUCGGCAGAAaacuGCCGGGcgaGGu -3' miRNA: 3'- gaGAGCCGUCUUgcauCGGCUCua-CC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 67666 | 0.66 | 0.87918 |
Target: 5'- cCUCUCGGgGGAAUa-GGaacaCGGGGUGGu -3' miRNA: 3'- -GAGAGCCgUCUUGcaUCg---GCUCUACC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 52041 | 0.66 | 0.87918 |
Target: 5'- aUCUCGGCucuacCGUuuGCCGAGucGUGGc -3' miRNA: 3'- gAGAGCCGucuu-GCAu-CGGCUC--UACC- -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 42979 | 0.66 | 0.900563 |
Target: 5'- -gUUCGGUAGAugGggAGCCGAcGAa-- -3' miRNA: 3'- gaGAGCCGUCUugCa-UCGGCU-CUacc -5' |
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12565 | 5' | -53.3 | NC_003345.1 | + | 50434 | 0.66 | 0.907178 |
Target: 5'- gCUCguaUCGGgAGGugGagccgcUGGCgGAGAUGGc -3' miRNA: 3'- -GAG---AGCCgUCUugC------AUCGgCUCUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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