Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12566 | 5' | -47 | NC_003345.1 | + | 69253 | 0.66 | 0.99797 |
Target: 5'- uCGAAGCUGACcccGGCGAgUGGGAGaagcUGAg- -3' miRNA: 3'- -GCUUUGGCUG---UUGCU-ACCUUC----ACUac -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 11660 | 0.66 | 0.99797 |
Target: 5'- -cGAGCCGACGAUGGUGuucguGUGAa- -3' miRNA: 3'- gcUUUGGCUGUUGCUACcuu--CACUac -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 55717 | 0.67 | 0.995088 |
Target: 5'- aCGAuacucguCCGGCggUGGUGGGgcgGGUGAa- -3' miRNA: 3'- -GCUuu-----GGCUGuuGCUACCU---UCACUac -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 36219 | 0.67 | 0.99584 |
Target: 5'- uGAAAUCGACu-CGAUGGAGuUGGc- -3' miRNA: 3'- gCUUUGGCUGuuGCUACCUUcACUac -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 50361 | 0.69 | 0.984342 |
Target: 5'- ----cCCGGCGguggugGCGGUGGAGGUGcUGg -3' miRNA: 3'- gcuuuGGCUGU------UGCUACCUUCACuAC- -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 73516 | 0.69 | 0.982241 |
Target: 5'- aGAAcCCGGCGGCGGUGGcuGAGcGAa- -3' miRNA: 3'- gCUUuGGCUGUUGCUACC--UUCaCUac -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 21131 | 0.7 | 0.972906 |
Target: 5'- gGAcGCUGACGACG-UGGAGGUaaucgacggaaucguGAUGg -3' miRNA: 3'- gCUuUGGCUGUUGCuACCUUCA---------------CUAC- -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 45138 | 0.7 | 0.964976 |
Target: 5'- uCGGguuAACCGACGAgGAgagGGAGGUcGUGg -3' miRNA: 3'- -GCU---UUGGCUGUUgCUa--CCUUCAcUAC- -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 42856 | 0.7 | 0.964976 |
Target: 5'- uCGAGGCCGACGAUG-UGGGgugucguacagaGGUcGGUGa -3' miRNA: 3'- -GCUUUGGCUGUUGCuACCU------------UCA-CUAC- -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 73431 | 0.71 | 0.952941 |
Target: 5'- cCGGGuucuGCCGACu-CGAUGG-AGUGAUa -3' miRNA: 3'- -GCUU----UGGCUGuuGCUACCuUCACUAc -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 62068 | 0.71 | 0.94353 |
Target: 5'- -cGAGCCGGagUAGCuGAUGGAAGUGAc- -3' miRNA: 3'- gcUUUGGCU--GUUG-CUACCUUCACUac -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 50419 | 0.71 | 0.94353 |
Target: 5'- uGGAGCCGcugGCGGaGAUGGcGGUGGUGa -3' miRNA: 3'- gCUUUGGC---UGUUgCUACCuUCACUAC- -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 57053 | 0.71 | 0.945503 |
Target: 5'- uCGAAACCGACGagucacuacuuccagACGAugUGGAAG-GGUa -3' miRNA: 3'- -GCUUUGGCUGU---------------UGCU--ACCUUCaCUAc -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 3388 | 0.73 | 0.879151 |
Target: 5'- aGAGAgCGGCGgauuGCGAUGGAAGcGAUa -3' miRNA: 3'- gCUUUgGCUGU----UGCUACCUUCaCUAc -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 50135 | 0.74 | 0.836679 |
Target: 5'- aCGAAGgcuCCGGCGgcuccgGCGGUGGAGGUGGc- -3' miRNA: 3'- -GCUUU---GGCUGU------UGCUACCUUCACUac -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 67266 | 0.79 | 0.5907 |
Target: 5'- aCGAAA---GCGACGGUGGGAGUGGUGg -3' miRNA: 3'- -GCUUUggcUGUUGCUACCUUCACUAC- -5' |
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12566 | 5' | -47 | NC_003345.1 | + | 59133 | 1.11 | 0.008827 |
Target: 5'- cCGAAACCGACAACGAUGGAAGUGAUGg -3' miRNA: 3'- -GCUUUGGCUGUUGCUACCUUCACUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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