miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12568 5' -54.8 NC_003345.1 + 72251 0.66 0.842758
Target:  5'- -cG-CCCGGuUCGuUGCGACGAaaGCg -3'
miRNA:   3'- caCaGGGCUcAGCuACGCUGCUgaCG- -5'
12568 5' -54.8 NC_003345.1 + 45934 0.66 0.837647
Target:  5'- -cGUCuCCGAGgacauucaggGCGACGAcCUGCu -3'
miRNA:   3'- caCAG-GGCUCagcua-----CGCUGCU-GACG- -5'
12568 5' -54.8 NC_003345.1 + 15072 0.66 0.834198
Target:  5'- cGUGUUCgGAG-CGAagcccGCcGCGACUGCc -3'
miRNA:   3'- -CACAGGgCUCaGCUa----CGcUGCUGACG- -5'
12568 5' -54.8 NC_003345.1 + 71917 0.66 0.834198
Target:  5'- --aUCCCGAGUCcc-GUGACGAuuCUGUu -3'
miRNA:   3'- cacAGGGCUCAGcuaCGCUGCU--GACG- -5'
12568 5' -54.8 NC_003345.1 + 12652 0.66 0.825437
Target:  5'- -gGUCgaaCCGAGUUGAUGCGcCGAacGCc -3'
miRNA:   3'- caCAG---GGCUCAGCUACGCuGCUgaCG- -5'
12568 5' -54.8 NC_003345.1 + 14045 0.67 0.807347
Target:  5'- aGUGaugCCgGAGacUCGAaacUGCGugGAgUGCg -3'
miRNA:   3'- -CACa--GGgCUC--AGCU---ACGCugCUgACG- -5'
12568 5' -54.8 NC_003345.1 + 54554 0.67 0.788564
Target:  5'- ----aCUGAGgaggaaauccUCGAUGCGAUGAUUGCc -3'
miRNA:   3'- cacagGGCUC----------AGCUACGCUGCUGACG- -5'
12568 5' -54.8 NC_003345.1 + 54728 0.67 0.788564
Target:  5'- -cGUCCCGAGUCG--GCGGaGACa-- -3'
miRNA:   3'- caCAGGGCUCAGCuaCGCUgCUGacg -5'
12568 5' -54.8 NC_003345.1 + 21864 0.68 0.738076
Target:  5'- gGUGaCgCCGAGuacgaccUCGAUGCGGUGAUUGCc -3'
miRNA:   3'- -CACaG-GGCUC-------AGCUACGCUGCUGACG- -5'
12568 5' -54.8 NC_003345.1 + 19997 0.69 0.665856
Target:  5'- ---aCCCgGAGUCGGUGCGcucggUGAUUGCg -3'
miRNA:   3'- cacaGGG-CUCAGCUACGCu----GCUGACG- -5'
12568 5' -54.8 NC_003345.1 + 71545 0.71 0.56993
Target:  5'- -aGUCCCGAgaGUCGggGCG-CGAUaGCu -3'
miRNA:   3'- caCAGGGCU--CAGCuaCGCuGCUGaCG- -5'
12568 5' -54.8 NC_003345.1 + 26653 0.71 0.558354
Target:  5'- cUGUCCCGAGUgCGGucuuaucUGCGACGAg--- -3'
miRNA:   3'- cACAGGGCUCA-GCU-------ACGCUGCUgacg -5'
12568 5' -54.8 NC_003345.1 + 62554 1.12 0.001181
Target:  5'- gGUGUCCCGAGUCGAUGCGACGACUGCg -3'
miRNA:   3'- -CACAGGGCUCAGCUACGCUGCUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.