Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12568 | 5' | -54.8 | NC_003345.1 | + | 72251 | 0.66 | 0.842758 |
Target: 5'- -cG-CCCGGuUCGuUGCGACGAaaGCg -3' miRNA: 3'- caCaGGGCUcAGCuACGCUGCUgaCG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 45934 | 0.66 | 0.837647 |
Target: 5'- -cGUCuCCGAGgacauucaggGCGACGAcCUGCu -3' miRNA: 3'- caCAG-GGCUCagcua-----CGCUGCU-GACG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 71917 | 0.66 | 0.834198 |
Target: 5'- --aUCCCGAGUCcc-GUGACGAuuCUGUu -3' miRNA: 3'- cacAGGGCUCAGcuaCGCUGCU--GACG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 15072 | 0.66 | 0.834198 |
Target: 5'- cGUGUUCgGAG-CGAagcccGCcGCGACUGCc -3' miRNA: 3'- -CACAGGgCUCaGCUa----CGcUGCUGACG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 12652 | 0.66 | 0.825437 |
Target: 5'- -gGUCgaaCCGAGUUGAUGCGcCGAacGCc -3' miRNA: 3'- caCAG---GGCUCAGCUACGCuGCUgaCG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 14045 | 0.67 | 0.807347 |
Target: 5'- aGUGaugCCgGAGacUCGAaacUGCGugGAgUGCg -3' miRNA: 3'- -CACa--GGgCUC--AGCU---ACGCugCUgACG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 54554 | 0.67 | 0.788564 |
Target: 5'- ----aCUGAGgaggaaauccUCGAUGCGAUGAUUGCc -3' miRNA: 3'- cacagGGCUC----------AGCUACGCUGCUGACG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 54728 | 0.67 | 0.788564 |
Target: 5'- -cGUCCCGAGUCG--GCGGaGACa-- -3' miRNA: 3'- caCAGGGCUCAGCuaCGCUgCUGacg -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 21864 | 0.68 | 0.738076 |
Target: 5'- gGUGaCgCCGAGuacgaccUCGAUGCGGUGAUUGCc -3' miRNA: 3'- -CACaG-GGCUC-------AGCUACGCUGCUGACG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 19997 | 0.69 | 0.665856 |
Target: 5'- ---aCCCgGAGUCGGUGCGcucggUGAUUGCg -3' miRNA: 3'- cacaGGG-CUCAGCUACGCu----GCUGACG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 71545 | 0.71 | 0.56993 |
Target: 5'- -aGUCCCGAgaGUCGggGCG-CGAUaGCu -3' miRNA: 3'- caCAGGGCU--CAGCuaCGCuGCUGaCG- -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 26653 | 0.71 | 0.558354 |
Target: 5'- cUGUCCCGAGUgCGGucuuaucUGCGACGAg--- -3' miRNA: 3'- cACAGGGCUCA-GCU-------ACGCUGCUgacg -5' |
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12568 | 5' | -54.8 | NC_003345.1 | + | 62554 | 1.12 | 0.001181 |
Target: 5'- gGUGUCCCGAGUCGAUGCGACGACUGCg -3' miRNA: 3'- -CACAGGGCUCAGCUACGCUGCUGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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