miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12569 3' -61.1 NC_003345.1 + 35915 0.66 0.517535
Target:  5'- gCGAGCUGACacgCCCGcauccccucuuugaGCUGGaUGGGGu -3'
miRNA:   3'- -GCUCGACUGa--GGGCcg------------CGACC-GCUCC- -5'
12569 3' -61.1 NC_003345.1 + 30600 0.67 0.486516
Target:  5'- cCGAGUcgGACUCCCGGCucaagaccgauuuGgaGGCGucccguGGc -3'
miRNA:   3'- -GCUCGa-CUGAGGGCCG-------------CgaCCGCu-----CC- -5'
12569 3' -61.1 NC_003345.1 + 24688 0.67 0.459188
Target:  5'- aGGGC-GAcCUCCCGGCGUccUGccgcCGAGGa -3'
miRNA:   3'- gCUCGaCU-GAGGGCCGCG--ACc---GCUCC- -5'
12569 3' -61.1 NC_003345.1 + 48247 0.67 0.449955
Target:  5'- uGAGCUGGucuuCUUCCGGUucuucuucuGCUGGCGuGc -3'
miRNA:   3'- gCUCGACU----GAGGGCCG---------CGACCGCuCc -5'
12569 3' -61.1 NC_003345.1 + 65162 0.68 0.430009
Target:  5'- cCGAGCUucuggacguugaaGACcaccccuUCCCcgaGGauaCGCUGGCGAGGg -3'
miRNA:   3'- -GCUCGA-------------CUG-------AGGG---CC---GCGACCGCUCC- -5'
12569 3' -61.1 NC_003345.1 + 47304 0.68 0.414082
Target:  5'- aGAGCUGAUucauguccgUCCCGGCGUUcaucaGCGucGGg -3'
miRNA:   3'- gCUCGACUG---------AGGGCCGCGAc----CGCu-CC- -5'
12569 3' -61.1 NC_003345.1 + 24472 0.68 0.396818
Target:  5'- aCGAGUuggUGugUCCCGGUgagcaucgaggaGCUGGUGGa- -3'
miRNA:   3'- -GCUCG---ACugAGGGCCG------------CGACCGCUcc -5'
12569 3' -61.1 NC_003345.1 + 33168 0.68 0.396818
Target:  5'- gCGGGUUGGCggucggCCCGGCGUagcccucGGUGuGGa -3'
miRNA:   3'- -GCUCGACUGa-----GGGCCGCGa------CCGCuCC- -5'
12569 3' -61.1 NC_003345.1 + 40328 0.7 0.317747
Target:  5'- uCGAGCUuguagugggugGACUCCagcguGGUGCgGGCGAGu -3'
miRNA:   3'- -GCUCGA-----------CUGAGGg----CCGCGaCCGCUCc -5'
12569 3' -61.1 NC_003345.1 + 30882 0.72 0.227886
Target:  5'- cCGAGUUGACUCugcgcuucuaaaCCGGCGgC-GGCGAGa -3'
miRNA:   3'- -GCUCGACUGAG------------GGCCGC-GaCCGCUCc -5'
12569 3' -61.1 NC_003345.1 + 56080 0.77 0.111591
Target:  5'- gGGGCggagguggUGGCUCUccacaCGGCGCUGGUGGGGg -3'
miRNA:   3'- gCUCG--------ACUGAGG-----GCCGCGACCGCUCC- -5'
12569 3' -61.1 NC_003345.1 + 69253 0.77 0.100411
Target:  5'- uCGaAGCUGAC-CCCGGCgagugggagaaGCUGaGCGAGGg -3'
miRNA:   3'- -GC-UCGACUGaGGGCCG-----------CGAC-CGCUCC- -5'
12569 3' -61.1 NC_003345.1 + 63322 1.09 0.000469
Target:  5'- gCGAGCUGACUCCCGGCGCUGGCGAGGu -3'
miRNA:   3'- -GCUCGACUGAGGGCCGCGACCGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.