Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12569 | 5' | -53.3 | NC_003345.1 | + | 68503 | 0.66 | 0.862348 |
Target: 5'- --aCCCGCucGCCGCcguccACUUCGAGGg -3' miRNA: 3'- uugGGGCGuuCGGCGc----UGAAGUUUUa -5' |
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12569 | 5' | -53.3 | NC_003345.1 | + | 12260 | 0.66 | 0.845299 |
Target: 5'- gAACCCUGCuccggugggccgGAGCCGaugaaCGACUcaUCGAAGUg -3' miRNA: 3'- -UUGGGGCG------------UUCGGC-----GCUGA--AGUUUUA- -5' |
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12569 | 5' | -53.3 | NC_003345.1 | + | 27753 | 0.67 | 0.808518 |
Target: 5'- cAACCUCGCAAGCaacuuGCGACgaUGAAAg -3' miRNA: 3'- -UUGGGGCGUUCGg----CGCUGaaGUUUUa -5' |
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12569 | 5' | -53.3 | NC_003345.1 | + | 38437 | 0.69 | 0.649566 |
Target: 5'- --aCCCGUAGGCuuCGCGGcCUUCGAGGUa -3' miRNA: 3'- uugGGGCGUUCG--GCGCU-GAAGUUUUA- -5' |
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12569 | 5' | -53.3 | NC_003345.1 | + | 21005 | 0.73 | 0.465283 |
Target: 5'- cAGCggCGCGAGCgGCGACUUCGAGGa -3' miRNA: 3'- -UUGggGCGUUCGgCGCUGAAGUUUUa -5' |
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12569 | 5' | -53.3 | NC_003345.1 | + | 21771 | 0.74 | 0.396309 |
Target: 5'- -gUCCCGCAGGCCGCcgaccagauuaucGACUUCAu--- -3' miRNA: 3'- uuGGGGCGUUCGGCG-------------CUGAAGUuuua -5' |
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12569 | 5' | -53.3 | NC_003345.1 | + | 14695 | 0.75 | 0.361331 |
Target: 5'- cGACCuuCCGCAuAGCCGCaGGCUUCGAGGa -3' miRNA: 3'- -UUGG--GGCGU-UCGGCG-CUGAAGUUUUa -5' |
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12569 | 5' | -53.3 | NC_003345.1 | + | 63288 | 1.03 | 0.004721 |
Target: 5'- cAACCCCGCAAGCCGCGACUUCAAAAUc -3' miRNA: 3'- -UUGGGGCGUUCGGCGCUGAAGUUUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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