miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1257 5' -54.3 NC_001317.1 + 3430 1.09 0.000543
Target:  5'- aACCCCAACGUCGCCAACCGCAACAAGg -3'
miRNA:   3'- -UGGGGUUGCAGCGGUUGGCGUUGUUC- -5'
1257 5' -54.3 NC_001317.1 + 2154 0.8 0.082869
Target:  5'- uGCUCCGGCGUCGUacuccagaCAGCCGCGGCGAa -3'
miRNA:   3'- -UGGGGUUGCAGCG--------GUUGGCGUUGUUc -5'
1257 5' -54.3 NC_001317.1 + 2124 0.76 0.137353
Target:  5'- cGCCaCCuACGagGCCAGCCGCAcCGAGg -3'
miRNA:   3'- -UGG-GGuUGCagCGGUUGGCGUuGUUC- -5'
1257 5' -54.3 NC_001317.1 + 9350 0.72 0.284689
Target:  5'- cACCCCGuaugccgcACGaaagCGCCAGCCGguACGGa -3'
miRNA:   3'- -UGGGGU--------UGCa---GCGGUUGGCguUGUUc -5'
1257 5' -54.3 NC_001317.1 + 19855 0.71 0.32441
Target:  5'- -aCCCGAC-UgGCUGACCGCAAUggGg -3'
miRNA:   3'- ugGGGUUGcAgCGGUUGGCGUUGuuC- -5'
1257 5' -54.3 NC_001317.1 + 9525 0.69 0.415685
Target:  5'- gGCCUCAAagacCGCCcaAACCGCAACAGc -3'
miRNA:   3'- -UGGGGUUgca-GCGG--UUGGCGUUGUUc -5'
1257 5' -54.3 NC_001317.1 + 18179 0.68 0.445977
Target:  5'- -aCCCAGCa-CGCCAGCaGCAGCGAu -3'
miRNA:   3'- ugGGGUUGcaGCGGUUGgCGUUGUUc -5'
1257 5' -54.3 NC_001317.1 + 16010 0.66 0.612133
Target:  5'- aACCCgAAUGUCGUgAcCCuCGACAAGc -3'
miRNA:   3'- -UGGGgUUGCAGCGgUuGGcGUUGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.