miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12572 3' -53 NC_003345.1 + 57355 0.66 0.870723
Target:  5'- -uCCUCGguGAGAuuguGCugGACACCAg -3'
miRNA:   3'- auGGAGCguCUCUugu-CG--UUGUGGUa -5'
12572 3' -53 NC_003345.1 + 66216 0.66 0.870723
Target:  5'- cUACUUCGguGAGAACuucGCGGCucaCAUa -3'
miRNA:   3'- -AUGGAGCguCUCUUGu--CGUUGug-GUA- -5'
12572 3' -53 NC_003345.1 + 23201 0.66 0.870723
Target:  5'- -uCUUUGUAGuGGAACAGCGcCACCGa -3'
miRNA:   3'- auGGAGCGUC-UCUUGUCGUuGUGGUa -5'
12572 3' -53 NC_003345.1 + 32776 0.67 0.807514
Target:  5'- uUGCCggUGCgAGAGAGCGGUcggcguuGACACCGc -3'
miRNA:   3'- -AUGGa-GCG-UCUCUUGUCG-------UUGUGGUa -5'
12572 3' -53 NC_003345.1 + 2260 0.67 0.798738
Target:  5'- aACCUCGCGGGGcGCuuc-GCACCAc -3'
miRNA:   3'- aUGGAGCGUCUCuUGucguUGUGGUa -5'
12572 3' -53 NC_003345.1 + 1995 0.67 0.788817
Target:  5'- cGCUUCGUuGAGAauACGGUgAACACCAUc -3'
miRNA:   3'- aUGGAGCGuCUCU--UGUCG-UUGUGGUA- -5'
12572 3' -53 NC_003345.1 + 42918 0.67 0.788817
Target:  5'- --aCUCGgGGAGGAUAGCGACcauaaACCGa -3'
miRNA:   3'- augGAGCgUCUCUUGUCGUUG-----UGGUa -5'
12572 3' -53 NC_003345.1 + 31386 0.68 0.747553
Target:  5'- cACUUCGgAGAGGAUAGCA--ACCGa -3'
miRNA:   3'- aUGGAGCgUCUCUUGUCGUugUGGUa -5'
12572 3' -53 NC_003345.1 + 52930 0.68 0.736904
Target:  5'- aACCUCGCAcccGAGGAUGGU--CGCCAUc -3'
miRNA:   3'- aUGGAGCGU---CUCUUGUCGuuGUGGUA- -5'
12572 3' -53 NC_003345.1 + 61966 0.68 0.736904
Target:  5'- gACagaGCAGGGGACAGgGACGCCc- -3'
miRNA:   3'- aUGgagCGUCUCUUGUCgUUGUGGua -5'
12572 3' -53 NC_003345.1 + 59026 0.71 0.570576
Target:  5'- cUACgaCGCGaGGGACAGCAAUGCCGUg -3'
miRNA:   3'- -AUGgaGCGUcUCUUGUCGUUGUGGUA- -5'
12572 3' -53 NC_003345.1 + 32597 0.71 0.559541
Target:  5'- gACCUCGUGGuuggguGGAACAGCAacggguucgacACGCCGUu -3'
miRNA:   3'- aUGGAGCGUC------UCUUGUCGU-----------UGUGGUA- -5'
12572 3' -53 NC_003345.1 + 69412 0.74 0.414418
Target:  5'- aAUCUgGUGGAGcuGACAGCAACACCGa -3'
miRNA:   3'- aUGGAgCGUCUC--UUGUCGUUGUGGUa -5'
12572 3' -53 NC_003345.1 + 25738 0.78 0.227033
Target:  5'- gACgCUCGCAGAGAACuuCGACGCCGUu -3'
miRNA:   3'- aUG-GAGCGUCUCUUGucGUUGUGGUA- -5'
12572 3' -53 NC_003345.1 + 66336 1.04 0.004327
Target:  5'- gUACCUCGCAGAGAACAGCAACACCAUc -3'
miRNA:   3'- -AUGGAGCGUCUCUUGUCGUUGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.