Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12572 | 5' | -51.7 | NC_003345.1 | + | 66301 | 1.09 | 0.00323 |
Target: 5'- cUGAUGGAGAGCUUGUUCCCGACGAUGa -3' miRNA: 3'- -ACUACCUCUCGAACAAGGGCUGCUAC- -5' |
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12572 | 5' | -51.7 | NC_003345.1 | + | 53563 | 0.84 | 0.152423 |
Target: 5'- gGAUGGAGAGCUUGgugugaCUGACGAUGu -3' miRNA: 3'- aCUACCUCUCGAACaag---GGCUGCUAC- -5' |
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12572 | 5' | -51.7 | NC_003345.1 | + | 9970 | 0.71 | 0.730032 |
Target: 5'- -cGUGGAGAGCcUGUUCCCaccuucuGAUGAa- -3' miRNA: 3'- acUACCUCUCGaACAAGGG-------CUGCUac -5' |
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12572 | 5' | -51.7 | NC_003345.1 | + | 75671 | 0.7 | 0.782636 |
Target: 5'- cGAUGagccGAGCUUcGacCCCGACGAUGa -3' miRNA: 3'- aCUACcu--CUCGAA-CaaGGGCUGCUAC- -5' |
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12572 | 5' | -51.7 | NC_003345.1 | + | 27872 | 0.69 | 0.839187 |
Target: 5'- cGAUGGGGuGUUUGacCCCaaguaucgGGCGAUGa -3' miRNA: 3'- aCUACCUCuCGAACaaGGG--------CUGCUAC- -5' |
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12572 | 5' | -51.7 | NC_003345.1 | + | 12977 | 0.68 | 0.864638 |
Target: 5'- gGA-GGAGAGCaUGaaCCCGAUGGa- -3' miRNA: 3'- aCUaCCUCUCGaACaaGGGCUGCUac -5' |
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12572 | 5' | -51.7 | NC_003345.1 | + | 26507 | 0.67 | 0.9021 |
Target: 5'- cUGAUGGAGGGCUacua--CGACGAg- -3' miRNA: 3'- -ACUACCUCUCGAacaaggGCUGCUac -5' |
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12572 | 5' | -51.7 | NC_003345.1 | + | 45800 | 0.66 | 0.938124 |
Target: 5'- uUGAUGGAGucaacGaCcUGUcgauUCCCGACGAg- -3' miRNA: 3'- -ACUACCUCu----C-GaACA----AGGGCUGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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