miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12573 3' -51.7 NC_003345.1 + 16472 0.66 0.944649
Target:  5'- aACCGGAGacUACGccGUaGAGCAACCGg -3'
miRNA:   3'- -UGGCCUU--GUGCcuCGaUUUGUUGGCa -5'
12573 3' -51.7 NC_003345.1 + 44100 0.66 0.939708
Target:  5'- cCCGcGAACGCGGAGUcc-ACGACUu- -3'
miRNA:   3'- uGGC-CUUGUGCCUCGauuUGUUGGca -5'
12573 3' -51.7 NC_003345.1 + 51989 0.66 0.928999
Target:  5'- cACCGGAACGucccgcUGGAGCUGAGgcGUCGUu -3'
miRNA:   3'- -UGGCCUUGU------GCCUCGAUUUguUGGCA- -5'
12573 3' -51.7 NC_003345.1 + 23892 0.66 0.923229
Target:  5'- gGCCGGAcgcucCACGGAGggcAAGCAcCCGg -3'
miRNA:   3'- -UGGCCUu----GUGCCUCga-UUUGUuGGCa -5'
12573 3' -51.7 NC_003345.1 + 46090 0.66 0.923229
Target:  5'- cGCCGcucGCACGGGGCUuGACcccgaggauugGGCCGg -3'
miRNA:   3'- -UGGCcu-UGUGCCUCGAuUUG-----------UUGGCa -5'
12573 3' -51.7 NC_003345.1 + 417 0.66 0.923229
Target:  5'- aACCGGAGagACGGAcGggAAACgGGCCGUa -3'
miRNA:   3'- -UGGCCUUg-UGCCU-CgaUUUG-UUGGCA- -5'
12573 3' -51.7 NC_003345.1 + 64106 0.67 0.91718
Target:  5'- uGCCGuguGAACagGCGGGGgaAuACGACCGUu -3'
miRNA:   3'- -UGGC---CUUG--UGCCUCgaUuUGUUGGCA- -5'
12573 3' -51.7 NC_003345.1 + 57318 0.67 0.910855
Target:  5'- cACCGGAaccACAUcGAGUcgGAGCGACCa- -3'
miRNA:   3'- -UGGCCU---UGUGcCUCGa-UUUGUUGGca -5'
12573 3' -51.7 NC_003345.1 + 3642 0.67 0.910208
Target:  5'- cACCGGAGCuuGGAugUGAACAguaaagacuuaauACCGUa -3'
miRNA:   3'- -UGGCCUUGugCCUcgAUUUGU-------------UGGCA- -5'
12573 3' -51.7 NC_003345.1 + 11116 0.67 0.904256
Target:  5'- uACCGGAACACGGAc---GACAAaaucUCGUg -3'
miRNA:   3'- -UGGCCUUGUGCCUcgauUUGUU----GGCA- -5'
12573 3' -51.7 NC_003345.1 + 38182 0.67 0.890245
Target:  5'- uCCGaGAGC-CGGAG-UGAACGACCa- -3'
miRNA:   3'- uGGC-CUUGuGCCUCgAUUUGUUGGca -5'
12573 3' -51.7 NC_003345.1 + 22778 0.68 0.882842
Target:  5'- uACCGaGAGCGCGGGagUGAGUAGCCGa -3'
miRNA:   3'- -UGGC-CUUGUGCCUcgAUUUGUUGGCa -5'
12573 3' -51.7 NC_003345.1 + 16193 0.68 0.85071
Target:  5'- aAUCGagcCACGGAGCUucaacGACGACCGg -3'
miRNA:   3'- -UGGCcuuGUGCCUCGAu----UUGUUGGCa -5'
12573 3' -51.7 NC_003345.1 + 898 0.69 0.833232
Target:  5'- gGCCGGAAC-CGGAGa-GAACuacCCGg -3'
miRNA:   3'- -UGGCCUUGuGCCUCgaUUUGuu-GGCa -5'
12573 3' -51.7 NC_003345.1 + 59594 0.69 0.833232
Target:  5'- gGCCGGAcucgcuucgaguGCGguUGGuGCUAuGGCGACCGUg -3'
miRNA:   3'- -UGGCCU------------UGU--GCCuCGAU-UUGUUGGCA- -5'
12573 3' -51.7 NC_003345.1 + 50035 0.69 0.813028
Target:  5'- cGCCGGAGCcgcCGGAGCcuucguuGCCGUu -3'
miRNA:   3'- -UGGCCUUGu--GCCUCGauuugu-UGGCA- -5'
12573 3' -51.7 NC_003345.1 + 49982 0.7 0.795807
Target:  5'- uGCCGGAAUAucacCGGGGCU-GACAACg-- -3'
miRNA:   3'- -UGGCCUUGU----GCCUCGAuUUGUUGgca -5'
12573 3' -51.7 NC_003345.1 + 53043 0.7 0.7659
Target:  5'- cACCGGAGCGCcgccuGAGCUGAACcauuCCa- -3'
miRNA:   3'- -UGGCCUUGUGc----CUCGAUUUGuu--GGca -5'
12573 3' -51.7 NC_003345.1 + 68197 0.7 0.75564
Target:  5'- uUCaGAgaaGCACGGAGCUGGACGuGCCGc -3'
miRNA:   3'- uGGcCU---UGUGCCUCGAUUUGU-UGGCa -5'
12573 3' -51.7 NC_003345.1 + 73726 0.7 0.745253
Target:  5'- -aUGGGGCGCGGAGCcgcuGACGACUa- -3'
miRNA:   3'- ugGCCUUGUGCCUCGau--UUGUUGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.