miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12573 5' -56 NC_003345.1 + 29799 0.66 0.799689
Target:  5'- cCGAuaccguGGgGCGACCGCCUCGgucgUCUa -3'
miRNA:   3'- -GCUu-----UCgCGCUGGUGGGGCaca-AGGa -5'
12573 5' -56 NC_003345.1 + 73118 0.66 0.780738
Target:  5'- uCGggGGCGUGuuCCuuCCCCGUGaaCUUc -3'
miRNA:   3'- -GCuuUCGCGCu-GGu-GGGGCACaaGGA- -5'
12573 5' -56 NC_003345.1 + 45918 0.66 0.774937
Target:  5'- -cAGGGCGaCGACCugCUCGUGgaguuugacgacuacUUCCUu -3'
miRNA:   3'- gcUUUCGC-GCUGGugGGGCAC---------------AAGGA- -5'
12573 5' -56 NC_003345.1 + 560 0.67 0.720757
Target:  5'- uGAAAGCG-GcCCGCCCCG-GUUUg- -3'
miRNA:   3'- gCUUUCGCgCuGGUGGGGCaCAAGga -5'
12573 5' -56 NC_003345.1 + 35431 0.67 0.720757
Target:  5'- aCGAGAG-GCGACCACUCCuuacacUCCUc -3'
miRNA:   3'- -GCUUUCgCGCUGGUGGGGcaca--AGGA- -5'
12573 5' -56 NC_003345.1 + 73870 0.68 0.678986
Target:  5'- cCGAAGucguUGCGACCAUCCgGUGUcCCa -3'
miRNA:   3'- -GCUUUc---GCGCUGGUGGGgCACAaGGa -5'
12573 5' -56 NC_003345.1 + 67692 0.68 0.664176
Target:  5'- uGGucGCGCuuucgagGGCCACCacgguuguuuagcuCCGUGUUCCg -3'
miRNA:   3'- gCUuuCGCG-------CUGGUGG--------------GGCACAAGGa -5'
12573 5' -56 NC_003345.1 + 35197 0.68 0.647184
Target:  5'- uCGAGGGCGuCGGCU--CCCGUGaagUCCUc -3'
miRNA:   3'- -GCUUUCGC-GCUGGugGGGCACa--AGGA- -5'
12573 5' -56 NC_003345.1 + 21347 0.69 0.615265
Target:  5'- cCGuGAGgGCGACgACCCgGUGagCCUc -3'
miRNA:   3'- -GCuUUCgCGCUGgUGGGgCACaaGGA- -5'
12573 5' -56 NC_003345.1 + 43431 0.71 0.500846
Target:  5'- uGAAcAG-GCGACCGuCgCCGUGUUCCUc -3'
miRNA:   3'- gCUU-UCgCGCUGGU-GgGGCACAAGGA- -5'
12573 5' -56 NC_003345.1 + 23568 0.71 0.480962
Target:  5'- gCGAGGGCGaCGGCCugUUCGUGacCCa -3'
miRNA:   3'- -GCUUUCGC-GCUGGugGGGCACaaGGa -5'
12573 5' -56 NC_003345.1 + 685 0.71 0.471164
Target:  5'- aGggGGC-CGACCGCCCCG-GUUa-- -3'
miRNA:   3'- gCuuUCGcGCUGGUGGGGCaCAAgga -5'
12573 5' -56 NC_003345.1 + 32292 0.79 0.167748
Target:  5'- aGAuGGaCGCG-CCGCCCCGUGUUCUg -3'
miRNA:   3'- gCUuUC-GCGCuGGUGGGGCACAAGGa -5'
12573 5' -56 NC_003345.1 + 67782 1.08 0.001643
Target:  5'- uCGAAAGCGCGACCACCCCGUGUUCCUa -3'
miRNA:   3'- -GCUUUCGCGCUGGUGGGGCACAAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.