Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12574 | 5' | -53.7 | NC_003345.1 | + | 73356 | 0.66 | 0.890293 |
Target: 5'- cGCCCgUCAUGUCCAUaaUGACguUUGAAacGCc -3' miRNA: 3'- -CGGG-AGUACAGGUA--GCUG--GACUU--CGc -5' |
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12574 | 5' | -53.7 | NC_003345.1 | + | 28151 | 0.66 | 0.881543 |
Target: 5'- aGCCgCUacguggucgguaAUGUCCAUCG-CgUGAAGCu -3' miRNA: 3'- -CGG-GAg-----------UACAGGUAGCuGgACUUCGc -5' |
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12574 | 5' | -53.7 | NC_003345.1 | + | 30956 | 0.66 | 0.859755 |
Target: 5'- cGUCCUUAU-UCCA-CGACUUGAGGaCGu -3' miRNA: 3'- -CGGGAGUAcAGGUaGCUGGACUUC-GC- -5' |
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12574 | 5' | -53.7 | NC_003345.1 | + | 43126 | 0.67 | 0.816475 |
Target: 5'- -aCUUCGUcUUCAUCGACCUccacggGGAGCGg -3' miRNA: 3'- cgGGAGUAcAGGUAGCUGGA------CUUCGC- -5' |
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12574 | 5' | -53.7 | NC_003345.1 | + | 62883 | 0.73 | 0.507903 |
Target: 5'- aGCCCUCAgaGUCCcgagcaggguagaCGACCUGAAcGCGa -3' miRNA: 3'- -CGGGAGUa-CAGGua-----------GCUGGACUU-CGC- -5' |
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12574 | 5' | -53.7 | NC_003345.1 | + | 68819 | 1.11 | 0.001774 |
Target: 5'- cGCCCUCAUGUCCAUCGACCUGAAGCGc -3' miRNA: 3'- -CGGGAGUACAGGUAGCUGGACUUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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