miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12575 3' -52.5 NC_003345.1 + 52334 0.66 0.908795
Target:  5'- -cGGgCUACGACGAG--ACGCACGa- -3'
miRNA:   3'- cuUCgGAUGCUGUUCcuUGCGUGCgu -5'
12575 3' -52.5 NC_003345.1 + 28014 0.66 0.901415
Target:  5'- cGAGUUUcaaacgaACGACGGGGAGCuuCACGCGa -3'
miRNA:   3'- cUUCGGA-------UGCUGUUCCUUGc-GUGCGU- -5'
12575 3' -52.5 NC_003345.1 + 3221 0.67 0.872645
Target:  5'- -cGGCCUuacUGACGAGGAAauCGagaaGCGCAa -3'
miRNA:   3'- cuUCGGAu--GCUGUUCCUU--GCg---UGCGU- -5'
12575 3' -52.5 NC_003345.1 + 32095 0.67 0.864638
Target:  5'- -cGGCCUcgugaACGACGAGGA--GCugGUg -3'
miRNA:   3'- cuUCGGA-----UGCUGUUCCUugCGugCGu -5'
12575 3' -52.5 NC_003345.1 + 20993 0.68 0.839187
Target:  5'- cGAAGCCagcUACGGCAuAGGuauuuGCGC-CGUAg -3'
miRNA:   3'- -CUUCGG---AUGCUGU-UCCu----UGCGuGCGU- -5'
12575 3' -52.5 NC_003345.1 + 33372 0.69 0.772596
Target:  5'- cGAAGCaCUcCGccuCAAGGAacACGCugGCGa -3'
miRNA:   3'- -CUUCG-GAuGCu--GUUCCU--UGCGugCGU- -5'
12575 3' -52.5 NC_003345.1 + 6397 0.71 0.666072
Target:  5'- gGAAGCCUACGAgAAGG-GCGUcaACGa- -3'
miRNA:   3'- -CUUCGGAUGCUgUUCCuUGCG--UGCgu -5'
12575 3' -52.5 NC_003345.1 + 58851 0.71 0.666072
Target:  5'- uGGAGUgCUACGugAaggguGGGGACGUugGCGa -3'
miRNA:   3'- -CUUCG-GAUGCugU-----UCCUUGCGugCGU- -5'
12575 3' -52.5 NC_003345.1 + 38680 0.71 0.655058
Target:  5'- cGAAGCCcgcaagcggaugUACGACAAcGGAACGUACu-- -3'
miRNA:   3'- -CUUCGG------------AUGCUGUU-CCUUGCGUGcgu -5'
12575 3' -52.5 NC_003345.1 + 41968 0.76 0.385853
Target:  5'- gGggGCCUACGACuuuuGGGAAgccaGCuACGCGa -3'
miRNA:   3'- -CuuCGGAUGCUGu---UCCUUg---CG-UGCGU- -5'
12575 3' -52.5 NC_003345.1 + 69697 0.99 0.012054
Target:  5'- uGAAGCCUACG-CAAGGAACGCACGCAg -3'
miRNA:   3'- -CUUCGGAUGCuGUUCCUUGCGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.