miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12576 3' -55.6 NC_003345.1 + 24541 0.66 0.83968
Target:  5'- cGGUGUUCAGCGCcgggauguGGCGUaUUCGgauGCCg -3'
miRNA:   3'- cCCACAAGUUGUGc-------CCGCG-AGGC---UGG- -5'
12576 3' -55.6 NC_003345.1 + 31895 0.66 0.822414
Target:  5'- gGGGcUGUUaCAuccGCACGGuGCGUUCUG-CUg -3'
miRNA:   3'- -CCC-ACAA-GU---UGUGCC-CGCGAGGCuGG- -5'
12576 3' -55.6 NC_003345.1 + 33474 0.66 0.813499
Target:  5'- -cGUGUUCcuuGAgGCGGaGUGCUUCGuCCa -3'
miRNA:   3'- ccCACAAG---UUgUGCC-CGCGAGGCuGG- -5'
12576 3' -55.6 NC_003345.1 + 68796 0.66 0.813499
Target:  5'- -uGUGUUCgGACGCGcGGUGCgCCGuACUg -3'
miRNA:   3'- ccCACAAG-UUGUGC-CCGCGaGGC-UGG- -5'
12576 3' -55.6 NC_003345.1 + 37703 0.66 0.801649
Target:  5'- uGGGUGUggCAugACGGcggcacgacucgauGUGUcgaaagCCGACCa -3'
miRNA:   3'- -CCCACAa-GUugUGCC--------------CGCGa-----GGCUGG- -5'
12576 3' -55.6 NC_003345.1 + 49283 0.67 0.785738
Target:  5'- aGGGgucguggGUUCuucuaaGCGaGGaCGCUCcCGACCa -3'
miRNA:   3'- -CCCa------CAAGuug---UGC-CC-GCGAG-GCUGG- -5'
12576 3' -55.6 NC_003345.1 + 67306 0.67 0.776177
Target:  5'- uGG-GUUCAGCgaaagAUGGGCGgUUuuGACCu -3'
miRNA:   3'- cCCaCAAGUUG-----UGCCCGC-GAggCUGG- -5'
12576 3' -55.6 NC_003345.1 + 73461 0.67 0.756651
Target:  5'- cGGccUGUUCGagaACGCGGuCGUUCaCGACCu -3'
miRNA:   3'- cCC--ACAAGU---UGUGCCcGCGAG-GCUGG- -5'
12576 3' -55.6 NC_003345.1 + 47038 0.68 0.710094
Target:  5'- cGGGUGgUCGGCGCGGagaauacccaucugaGCGC-CaCGACg -3'
miRNA:   3'- -CCCACaAGUUGUGCC---------------CGCGaG-GCUGg -5'
12576 3' -55.6 NC_003345.1 + 48320 0.68 0.70596
Target:  5'- ---cGUUCAACcgugaaGCGGuGCGCUCCGuuCa -3'
miRNA:   3'- cccaCAAGUUG------UGCC-CGCGAGGCugG- -5'
12576 3' -55.6 NC_003345.1 + 37187 0.68 0.685146
Target:  5'- aGG-GUUCGugGuCGGuucCGCUCCGACUg -3'
miRNA:   3'- cCCaCAAGUugU-GCCc--GCGAGGCUGG- -5'
12576 3' -55.6 NC_003345.1 + 21219 0.73 0.439915
Target:  5'- uGGGauacgugGUUCGcCACcgacgacaacGGCGCUCCGACCg -3'
miRNA:   3'- -CCCa------CAAGUuGUGc---------CCGCGAGGCUGG- -5'
12576 3' -55.6 NC_003345.1 + 63247 0.74 0.360788
Target:  5'- cGGUGggUAGCACGGGCGaCUCggugGACUa -3'
miRNA:   3'- cCCACaaGUUGUGCCCGC-GAGg---CUGG- -5'
12576 3' -55.6 NC_003345.1 + 70777 1.13 0.000874
Target:  5'- cGGGUGUUCAACACGGGCGCUCCGACCc -3'
miRNA:   3'- -CCCACAAGUUGUGCCCGCGAGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.