miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12576 5' -55.6 NC_003345.1 + 8421 0.66 0.802682
Target:  5'- cGUGGUGGA-CGaCCUCAa--GCACCaCCu -3'
miRNA:   3'- -CACCACUUcGC-GGAGUgcaUGUGG-GG- -5'
12576 5' -55.6 NC_003345.1 + 29806 0.66 0.799876
Target:  5'- --cGUGggGCgaccGCCUCGguCGUcuacuguaccggguGCGCCCCg -3'
miRNA:   3'- cacCACuuCG----CGGAGU--GCA--------------UGUGGGG- -5'
12576 5' -55.6 NC_003345.1 + 33223 0.66 0.773974
Target:  5'- -aGGccguUGAA-CGCCgggaaCACGUAgGCCCCg -3'
miRNA:   3'- caCC----ACUUcGCGGa----GUGCAUgUGGGG- -5'
12576 5' -55.6 NC_003345.1 + 55383 0.66 0.773974
Target:  5'- gGUGGUGAcGGUGgCUCugGUAUugUUa -3'
miRNA:   3'- -CACCACU-UCGCgGAGugCAUGugGGg -5'
12576 5' -55.6 NC_003345.1 + 49165 0.66 0.773974
Target:  5'- cGUGGUcgGGAGCGuCCUCGCuUagaagaacccACgACCCCu -3'
miRNA:   3'- -CACCA--CUUCGC-GGAGUGcA----------UG-UGGGG- -5'
12576 5' -55.6 NC_003345.1 + 65528 0.66 0.764113
Target:  5'- aUGaGUGGAuGCGCgacguggacaCUCugGaagACACCCCg -3'
miRNA:   3'- cAC-CACUU-CGCG----------GAGugCa--UGUGGGG- -5'
12576 5' -55.6 NC_003345.1 + 14549 0.67 0.744016
Target:  5'- -cGGUGGguAGUuaCUCACGcuucCACCCCc -3'
miRNA:   3'- caCCACU--UCGcgGAGUGCau--GUGGGG- -5'
12576 5' -55.6 NC_003345.1 + 18848 0.67 0.744016
Target:  5'- -gGGcUGAAGUaCCUCAccCGUugcguCACCCCa -3'
miRNA:   3'- caCC-ACUUCGcGGAGU--GCAu----GUGGGG- -5'
12576 5' -55.6 NC_003345.1 + 8774 0.67 0.7338
Target:  5'- -aGGUGGccgagcuaaucgGGcCGCUUUACGUugACACUCCg -3'
miRNA:   3'- caCCACU------------UC-GCGGAGUGCA--UGUGGGG- -5'
12576 5' -55.6 NC_003345.1 + 32854 0.67 0.7183
Target:  5'- uUGGUGuccuuccAAGCGUCcaucaggucguagCAgGUACGCCCCu -3'
miRNA:   3'- cACCAC-------UUCGCGGa------------GUgCAUGUGGGG- -5'
12576 5' -55.6 NC_003345.1 + 10376 0.68 0.692079
Target:  5'- -cGGUGggGCGUUUCGcCGUuUACUCUc -3'
miRNA:   3'- caCCACuuCGCGGAGU-GCAuGUGGGG- -5'
12576 5' -55.6 NC_003345.1 + 70671 0.69 0.585296
Target:  5'- cGUGGgucGGAGCGCC-CGUGUugaACACCCg -3'
miRNA:   3'- -CACCa--CUUCGCGGaGUGCA---UGUGGGg -5'
12576 5' -55.6 NC_003345.1 + 39499 0.69 0.585296
Target:  5'- cGUGGUGAGGCccgacgugguuaGCCcaaUACGUaGCgACCCCg -3'
miRNA:   3'- -CACCACUUCG------------CGGa--GUGCA-UG-UGGGG- -5'
12576 5' -55.6 NC_003345.1 + 48301 0.7 0.532738
Target:  5'- -cGG-GAAGCGgCUCAgGaauCGCCCCg -3'
miRNA:   3'- caCCaCUUCGCgGAGUgCau-GUGGGG- -5'
12576 5' -55.6 NC_003345.1 + 70742 1.12 0.000832
Target:  5'- aGUGGUGAAGCGCCUCACGUACACCCCg -3'
miRNA:   3'- -CACCACUUCGCGGAGUGCAUGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.