Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 71296 | 1.11 | 0.003443 |
Target: 5'- uGCGAAGAACGACAAUCGUAGCCGCCGu -3' miRNA: 3'- -CGCUUCUUGCUGUUAGCAUCGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 42198 | 0.73 | 0.669397 |
Target: 5'- gGCGAGuaggagccGAGCGAgAAgcgCGUGGCCGCUc -3' miRNA: 3'- -CGCUU--------CUUGCUgUUa--GCAUCGGCGGc -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 69852 | 0.72 | 0.70185 |
Target: 5'- aGCGAAGAcguUGAUGguaacaccaucGUCGUcGCCGCCGa -3' miRNA: 3'- -CGCUUCUu--GCUGU-----------UAGCAuCGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 71147 | 0.71 | 0.784613 |
Target: 5'- aGCG-AGAGuCG-CAGUCGUAaucGCCGCCc -3' miRNA: 3'- -CGCuUCUU-GCuGUUAGCAU---CGGCGGc -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 49203 | 0.71 | 0.784613 |
Target: 5'- cGCGAGGAugGGCAAaaa-GGCCGCg- -3' miRNA: 3'- -CGCUUCUugCUGUUagcaUCGGCGgc -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 14647 | 0.69 | 0.857419 |
Target: 5'- uCGAGGAugGgAUAGUCGgGGUCGCaCGg -3' miRNA: 3'- cGCUUCUugC-UGUUAGCaUCGGCG-GC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 26631 | 0.69 | 0.888528 |
Target: 5'- cGCGucguGAGCGACGggaaugaacucGUCGUAGuaGCCc -3' miRNA: 3'- -CGCuu--CUUGCUGU-----------UAGCAUCggCGGc -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 75130 | 0.68 | 0.908523 |
Target: 5'- uGCGAA-AACuGCGAUUGUGGCCuuucugaGCCGg -3' miRNA: 3'- -CGCUUcUUGcUGUUAGCAUCGG-------CGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 37835 | 0.68 | 0.909172 |
Target: 5'- uCGGAGGGCuggucggcuuucGACAcaucgaGUCGU-GCCGCCGu -3' miRNA: 3'- cGCUUCUUG------------CUGU------UAGCAuCGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 65685 | 0.68 | 0.919799 |
Target: 5'- gGUGAGGugauUGACAcccacuacgcucguGUCaGUAGCCGCCc -3' miRNA: 3'- -CGCUUCuu--GCUGU--------------UAG-CAUCGGCGGc -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 24704 | 0.67 | 0.927394 |
Target: 5'- gGCGuuccguacuucGAGGGCGACcucccggCGUccuGCCGCCGa -3' miRNA: 3'- -CGC-----------UUCUUGCUGuua----GCAu--CGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 2326 | 0.67 | 0.927394 |
Target: 5'- gGCGAggaAGAACGcucuccCAAUUG-AGCCGUCGc -3' miRNA: 3'- -CGCU---UCUUGCu-----GUUAGCaUCGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 28847 | 0.67 | 0.927394 |
Target: 5'- --cGAGAACGACcucgauuacgaAAUCGccggGGUCGCCGg -3' miRNA: 3'- cgcUUCUUGCUG-----------UUAGCa---UCGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 72873 | 0.67 | 0.938177 |
Target: 5'- gGCGAgcGGAugGACu-UC---GCCGCCGa -3' miRNA: 3'- -CGCU--UCUugCUGuuAGcauCGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 73736 | 0.67 | 0.943161 |
Target: 5'- -aGAGGAcGCGAUGGggcgCGgAGCCGCUGa -3' miRNA: 3'- cgCUUCU-UGCUGUUa---GCaUCGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 47175 | 0.67 | 0.943161 |
Target: 5'- gGUGAagcAGGGCGGCAagcGUCGUGG-CGCUc -3' miRNA: 3'- -CGCU---UCUUGCUGU---UAGCAUCgGCGGc -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 29563 | 0.67 | 0.947876 |
Target: 5'- aGCGAAGAcuACGcCGA-CGaAGCCGCg- -3' miRNA: 3'- -CGCUUCU--UGCuGUUaGCaUCGGCGgc -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 53931 | 0.67 | 0.947876 |
Target: 5'- cGCGGAGGuuuucgucCGACucgCGguucucGCCGCCGg -3' miRNA: 3'- -CGCUUCUu-------GCUGuuaGCau----CGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 20471 | 0.66 | 0.952324 |
Target: 5'- cCGAAGGguuCGAgAGUCGcuucgaGGUCGCCGg -3' miRNA: 3'- cGCUUCUu--GCUgUUAGCa-----UCGGCGGC- -5' |
|||||||
12577 | 3' | -51.1 | NC_003345.1 | + | 31012 | 0.66 | 0.952324 |
Target: 5'- uUGAGGGuguuCGACcucUCGccGCCGCCGg -3' miRNA: 3'- cGCUUCUu---GCUGuu-AGCauCGGCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home