miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12577 5' -53.7 NC_003345.1 + 10883 0.66 0.897129
Target:  5'- uGGCGuucaaagacccgaGCGAUgaacgcCGACauaGCGGCUCUCa -3'
miRNA:   3'- -CCGC-------------CGCUAau----GCUGa--CGCUGAGAGc -5'
12577 5' -53.7 NC_003345.1 + 25429 0.66 0.883705
Target:  5'- gGGCGGCGAagaaGACgugGUGAUUCa-- -3'
miRNA:   3'- -CCGCCGCUaaugCUGa--CGCUGAGagc -5'
12577 5' -53.7 NC_003345.1 + 65120 0.66 0.882974
Target:  5'- cGCuGGCGAggGCGACUguuuccaGCGACUUcaaCGg -3'
miRNA:   3'- cCG-CCGCUaaUGCUGA-------CGCUGAGa--GC- -5'
12577 5' -53.7 NC_003345.1 + 21887 0.66 0.880765
Target:  5'- uGCGGUGAUUGCcgaGAUUGagaaccggauguaGGCUCUCu -3'
miRNA:   3'- cCGCCGCUAAUG---CUGACg------------CUGAGAGc -5'
12577 5' -53.7 NC_003345.1 + 59549 0.66 0.876283
Target:  5'- aGGC-GCGGUUAUGuCUGCGguuGCUucaCUCGg -3'
miRNA:   3'- -CCGcCGCUAAUGCuGACGC---UGA---GAGC- -5'
12577 5' -53.7 NC_003345.1 + 7514 0.67 0.844258
Target:  5'- gGGCGGCGGUUgGCGgAUUGCcuuuccgaguGACUCg-- -3'
miRNA:   3'- -CCGCCGCUAA-UGC-UGACG----------CUGAGagc -5'
12577 5' -53.7 NC_003345.1 + 40048 0.67 0.844258
Target:  5'- cGCGGCuuGAUacaGCGGCUcgaacGCGGCUCgUCGg -3'
miRNA:   3'- cCGCCG--CUAa--UGCUGA-----CGCUGAG-AGC- -5'
12577 5' -53.7 NC_003345.1 + 69569 0.67 0.835703
Target:  5'- cGGCGGCGugacGCaGACUGCucC-CUCGg -3'
miRNA:   3'- -CCGCCGCuaa-UG-CUGACGcuGaGAGC- -5'
12577 5' -53.7 NC_003345.1 + 9066 0.67 0.826945
Target:  5'- aGCGGUguuGAUUugGGCgGCGAUuaUCGg -3'
miRNA:   3'- cCGCCG---CUAAugCUGaCGCUGagAGC- -5'
12577 5' -53.7 NC_003345.1 + 21698 0.68 0.799538
Target:  5'- --gGGCGGUUccaGCGGCUccaGCGGCUCgcUCGg -3'
miRNA:   3'- ccgCCGCUAA---UGCUGA---CGCUGAG--AGC- -5'
12577 5' -53.7 NC_003345.1 + 50787 0.68 0.790056
Target:  5'- cGGCGGCGGUggaaACGGCgGgGACgCUgGc -3'
miRNA:   3'- -CCGCCGCUAa---UGCUGaCgCUGaGAgC- -5'
12577 5' -53.7 NC_003345.1 + 62555 0.68 0.790056
Target:  5'- cGGUGucccgaguCGAUgcgACGACUGCGGCUgUUGa -3'
miRNA:   3'- -CCGCc-------GCUAa--UGCUGACGCUGAgAGC- -5'
12577 5' -53.7 NC_003345.1 + 10648 0.69 0.740508
Target:  5'- cGGuCGGCccgucGAUUACGACguucgUGUGACcCUCGa -3'
miRNA:   3'- -CC-GCCG-----CUAAUGCUG-----ACGCUGaGAGC- -5'
12577 5' -53.7 NC_003345.1 + 2605 0.69 0.740508
Target:  5'- -aCGGCGGUaGCGACgGCGACgg-CGg -3'
miRNA:   3'- ccGCCGCUAaUGCUGaCGCUGagaGC- -5'
12577 5' -53.7 NC_003345.1 + 21363 0.7 0.705249
Target:  5'- -cCGGUGAgccucggcaacugUACG-CUGUGGCUCUCGa -3'
miRNA:   3'- ccGCCGCUa------------AUGCuGACGCUGAGAGC- -5'
12577 5' -53.7 NC_003345.1 + 73510 0.7 0.688359
Target:  5'- cGGCGGCGG---UGGCUgaGCGAauCUCUCa -3'
miRNA:   3'- -CCGCCGCUaauGCUGA--CGCU--GAGAGc -5'
12577 5' -53.7 NC_003345.1 + 50359 0.71 0.624187
Target:  5'- cGGCGGUGGUgGCGguggagguGCUgGCGGCUCcuUCGg -3'
miRNA:   3'- -CCGCCGCUAaUGC--------UGA-CGCUGAG--AGC- -5'
12577 5' -53.7 NC_003345.1 + 20361 0.71 0.624187
Target:  5'- -cCGGCGAccuCGAa-GCGACUCUCGa -3'
miRNA:   3'- ccGCCGCUaauGCUgaCGCUGAGAGC- -5'
12577 5' -53.7 NC_003345.1 + 56088 0.72 0.602749
Target:  5'- cGGUGGUGGggGCGGaggugGUGGCUCUCc -3'
miRNA:   3'- -CCGCCGCUaaUGCUga---CGCUGAGAGc -5'
12577 5' -53.7 NC_003345.1 + 34516 0.74 0.46835
Target:  5'- cGCGGCGAgucCGGuCUGCGACUgUCc -3'
miRNA:   3'- cCGCCGCUaauGCU-GACGCUGAgAGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.