Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12577 | 5' | -53.7 | NC_003345.1 | + | 10883 | 0.66 | 0.897129 |
Target: 5'- uGGCGuucaaagacccgaGCGAUgaacgcCGACauaGCGGCUCUCa -3' miRNA: 3'- -CCGC-------------CGCUAau----GCUGa--CGCUGAGAGc -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 25429 | 0.66 | 0.883705 |
Target: 5'- gGGCGGCGAagaaGACgugGUGAUUCa-- -3' miRNA: 3'- -CCGCCGCUaaugCUGa--CGCUGAGagc -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 65120 | 0.66 | 0.882974 |
Target: 5'- cGCuGGCGAggGCGACUguuuccaGCGACUUcaaCGg -3' miRNA: 3'- cCG-CCGCUaaUGCUGA-------CGCUGAGa--GC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 21887 | 0.66 | 0.880765 |
Target: 5'- uGCGGUGAUUGCcgaGAUUGagaaccggauguaGGCUCUCu -3' miRNA: 3'- cCGCCGCUAAUG---CUGACg------------CUGAGAGc -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 59549 | 0.66 | 0.876283 |
Target: 5'- aGGC-GCGGUUAUGuCUGCGguuGCUucaCUCGg -3' miRNA: 3'- -CCGcCGCUAAUGCuGACGC---UGA---GAGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 7514 | 0.67 | 0.844258 |
Target: 5'- gGGCGGCGGUUgGCGgAUUGCcuuuccgaguGACUCg-- -3' miRNA: 3'- -CCGCCGCUAA-UGC-UGACG----------CUGAGagc -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 40048 | 0.67 | 0.844258 |
Target: 5'- cGCGGCuuGAUacaGCGGCUcgaacGCGGCUCgUCGg -3' miRNA: 3'- cCGCCG--CUAa--UGCUGA-----CGCUGAG-AGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 69569 | 0.67 | 0.835703 |
Target: 5'- cGGCGGCGugacGCaGACUGCucC-CUCGg -3' miRNA: 3'- -CCGCCGCuaa-UG-CUGACGcuGaGAGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 9066 | 0.67 | 0.826945 |
Target: 5'- aGCGGUguuGAUUugGGCgGCGAUuaUCGg -3' miRNA: 3'- cCGCCG---CUAAugCUGaCGCUGagAGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 21698 | 0.68 | 0.799538 |
Target: 5'- --gGGCGGUUccaGCGGCUccaGCGGCUCgcUCGg -3' miRNA: 3'- ccgCCGCUAA---UGCUGA---CGCUGAG--AGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 50787 | 0.68 | 0.790056 |
Target: 5'- cGGCGGCGGUggaaACGGCgGgGACgCUgGc -3' miRNA: 3'- -CCGCCGCUAa---UGCUGaCgCUGaGAgC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 62555 | 0.68 | 0.790056 |
Target: 5'- cGGUGucccgaguCGAUgcgACGACUGCGGCUgUUGa -3' miRNA: 3'- -CCGCc-------GCUAa--UGCUGACGCUGAgAGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 10648 | 0.69 | 0.740508 |
Target: 5'- cGGuCGGCccgucGAUUACGACguucgUGUGACcCUCGa -3' miRNA: 3'- -CC-GCCG-----CUAAUGCUG-----ACGCUGaGAGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 2605 | 0.69 | 0.740508 |
Target: 5'- -aCGGCGGUaGCGACgGCGACgg-CGg -3' miRNA: 3'- ccGCCGCUAaUGCUGaCGCUGagaGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 21363 | 0.7 | 0.705249 |
Target: 5'- -cCGGUGAgccucggcaacugUACG-CUGUGGCUCUCGa -3' miRNA: 3'- ccGCCGCUa------------AUGCuGACGCUGAGAGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 73510 | 0.7 | 0.688359 |
Target: 5'- cGGCGGCGG---UGGCUgaGCGAauCUCUCa -3' miRNA: 3'- -CCGCCGCUaauGCUGA--CGCU--GAGAGc -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 50359 | 0.71 | 0.624187 |
Target: 5'- cGGCGGUGGUgGCGguggagguGCUgGCGGCUCcuUCGg -3' miRNA: 3'- -CCGCCGCUAaUGC--------UGA-CGCUGAG--AGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 20361 | 0.71 | 0.624187 |
Target: 5'- -cCGGCGAccuCGAa-GCGACUCUCGa -3' miRNA: 3'- ccGCCGCUaauGCUgaCGCUGAGAGC- -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 56088 | 0.72 | 0.602749 |
Target: 5'- cGGUGGUGGggGCGGaggugGUGGCUCUCc -3' miRNA: 3'- -CCGCCGCUaaUGCUga---CGCUGAGAGc -5' |
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12577 | 5' | -53.7 | NC_003345.1 | + | 34516 | 0.74 | 0.46835 |
Target: 5'- cGCGGCGAgucCGGuCUGCGACUgUCc -3' miRNA: 3'- cCGCCGCUaauGCU-GACGCUGAgAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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