Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12578 | 3' | -55.9 | NC_003345.1 | + | 46302 | 0.66 | 0.756476 |
Target: 5'- -cGAGUAcCCGCCUCGAUGguUCUGUc- -3' miRNA: 3'- gcUUCGUuGGCGGAGCUAC--GGACGaa -5' |
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12578 | 3' | -55.9 | NC_003345.1 | + | 53761 | 0.66 | 0.735879 |
Target: 5'- uGAacGGCGuuuCCGUCUCGGgaacGCUUGCUg -3' miRNA: 3'- gCU--UCGUu--GGCGGAGCUa---CGGACGAa -5' |
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12578 | 3' | -55.9 | NC_003345.1 | + | 51549 | 0.66 | 0.725422 |
Target: 5'- gCGGAGCAaaucccACC-CCUCGAUGCgUGa-- -3' miRNA: 3'- -GCUUCGU------UGGcGGAGCUACGgACgaa -5' |
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12578 | 3' | -55.9 | NC_003345.1 | + | 15067 | 0.68 | 0.628519 |
Target: 5'- uCGGAGCGAagcCCGCCgCGAcUGCCggGCa- -3' miRNA: 3'- -GCUUCGUU---GGCGGaGCU-ACGGa-CGaa -5' |
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12578 | 3' | -55.9 | NC_003345.1 | + | 56647 | 0.68 | 0.617634 |
Target: 5'- gCGAGGUcaGACU-CCUCGAUGCUUGUa- -3' miRNA: 3'- -GCUUCG--UUGGcGGAGCUACGGACGaa -5' |
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12578 | 3' | -55.9 | NC_003345.1 | + | 6396 | 0.69 | 0.552889 |
Target: 5'- cCGGAGCuuugAGCCGCCaCGAgagGCgUGCUUc -3' miRNA: 3'- -GCUUCG----UUGGCGGaGCUa--CGgACGAA- -5' |
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12578 | 3' | -55.9 | NC_003345.1 | + | 42201 | 0.72 | 0.403311 |
Target: 5'- uCGggGaCAACaucaGCCUCGAUGCCUa--- -3' miRNA: 3'- -GCuuC-GUUGg---CGGAGCUACGGAcgaa -5' |
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12578 | 3' | -55.9 | NC_003345.1 | + | 14573 | 0.73 | 0.351012 |
Target: 5'- aCGGAGCGGCaaucuuCCUCGAaGCCUGCg- -3' miRNA: 3'- -GCUUCGUUGgc----GGAGCUaCGGACGaa -5' |
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12578 | 3' | -55.9 | NC_003345.1 | + | 29808 | 0.77 | 0.201835 |
Target: 5'- uGggGCGACCGCCUCGGUcGUCUaCUg -3' miRNA: 3'- gCuuCGUUGGCGGAGCUA-CGGAcGAa -5' |
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12578 | 3' | -55.9 | NC_003345.1 | + | 71958 | 1.05 | 0.002097 |
Target: 5'- gCGAAGCAACCGCCUCGAUGCCUGCUUu -3' miRNA: 3'- -GCUUCGUUGGCGGAGCUACGGACGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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