miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12579 5' -55.3 NC_003345.1 + 33834 0.66 0.842654
Target:  5'- aUCCCGuacuCGGCGGCGAgGuCAACGu-- -3'
miRNA:   3'- cGGGGCu---GCUGCUGCUgC-GUUGCuaa -5'
12579 5' -55.3 NC_003345.1 + 21133 0.66 0.842654
Target:  5'- aCgCUGACGACGugGAgGUAAuCGAc- -3'
miRNA:   3'- cGgGGCUGCUGCugCUgCGUU-GCUaa -5'
12579 5' -55.3 NC_003345.1 + 47417 0.66 0.834127
Target:  5'- uCCUCGGCucCGGCGACGUucucAGCGAc- -3'
miRNA:   3'- cGGGGCUGcuGCUGCUGCG----UUGCUaa -5'
12579 5' -55.3 NC_003345.1 + 21566 0.66 0.834127
Target:  5'- -gCCCGACGACG-CGGagaGCGaagACGAc- -3'
miRNA:   3'- cgGGGCUGCUGCuGCUg--CGU---UGCUaa -5'
12579 5' -55.3 NC_003345.1 + 34740 0.66 0.825402
Target:  5'- aCCCCGACGACGuucccgugAUGGcCGCucGCGGg- -3'
miRNA:   3'- cGGGGCUGCUGC--------UGCU-GCGu-UGCUaa -5'
12579 5' -55.3 NC_003345.1 + 74451 0.66 0.825402
Target:  5'- aGCCCCGgauuaugcACGccuacuucuACGGCGAUGCGAaGAUUc -3'
miRNA:   3'- -CGGGGC--------UGC---------UGCUGCUGCGUUgCUAA- -5'
12579 5' -55.3 NC_003345.1 + 26798 0.66 0.816486
Target:  5'- aGCgCCUGAUGAacgaGACGAC-CGugGAUa -3'
miRNA:   3'- -CG-GGGCUGCUg---CUGCUGcGUugCUAa -5'
12579 5' -55.3 NC_003345.1 + 32708 0.66 0.816486
Target:  5'- --aCCGGCuACGGCGGCcCGACGAUUc -3'
miRNA:   3'- cggGGCUGcUGCUGCUGcGUUGCUAA- -5'
12579 5' -55.3 NC_003345.1 + 67686 0.66 0.807389
Target:  5'- uCCCCGACcguguACGAC-ACGCAcguuGCGAUUu -3'
miRNA:   3'- cGGGGCUGc----UGCUGcUGCGU----UGCUAA- -5'
12579 5' -55.3 NC_003345.1 + 9790 0.66 0.807389
Target:  5'- aGCCCCacCGACaGCGACaGCGACGu-- -3'
miRNA:   3'- -CGGGGcuGCUGcUGCUG-CGUUGCuaa -5'
12579 5' -55.3 NC_003345.1 + 62552 0.66 0.79812
Target:  5'- uGUCCCGAguCGauGCGACGACuGCGGCuGUUg -3'
miRNA:   3'- -CGGGGCU--GC--UGCUGCUG-CGUUGcUAA- -5'
12579 5' -55.3 NC_003345.1 + 55044 0.66 0.79812
Target:  5'- aCCCCGGagcgggGACGGCGAgCGUggUGAa- -3'
miRNA:   3'- cGGGGCUg-----CUGCUGCU-GCGuuGCUaa -5'
12579 5' -55.3 NC_003345.1 + 20211 0.66 0.79812
Target:  5'- --aUgGACGACGACGACGCucccucCGGUg -3'
miRNA:   3'- cggGgCUGCUGCUGCUGCGuu----GCUAa -5'
12579 5' -55.3 NC_003345.1 + 8197 0.67 0.79248
Target:  5'- cGUCCCGAcuucgaggcuuccaaCGAaGACGACcCGACGAUUu -3'
miRNA:   3'- -CGGGGCU---------------GCUgCUGCUGcGUUGCUAA- -5'
12579 5' -55.3 NC_003345.1 + 53498 0.67 0.769378
Target:  5'- uUCCCGGCGuCuACGACGUuACGAg- -3'
miRNA:   3'- cGGGGCUGCuGcUGCUGCGuUGCUaa -5'
12579 5' -55.3 NC_003345.1 + 38644 0.67 0.766433
Target:  5'- uUCCCGugGAUGGgcgcacucggaguuCGACGcCGACGAa- -3'
miRNA:   3'- cGGGGCugCUGCU--------------GCUGC-GUUGCUaa -5'
12579 5' -55.3 NC_003345.1 + 50704 0.67 0.759518
Target:  5'- cGCCgCCGuuaGAaccaGAacCGACGCGGCGAUUg -3'
miRNA:   3'- -CGG-GGCug-CUg---CU--GCUGCGUUGCUAA- -5'
12579 5' -55.3 NC_003345.1 + 26928 0.67 0.759518
Target:  5'- cGCCCuCGAugagcggauaUGAUGGCGAaggGCGACGAg- -3'
miRNA:   3'- -CGGG-GCU----------GCUGCUGCUg--CGUUGCUaa -5'
12579 5' -55.3 NC_003345.1 + 42326 0.67 0.749537
Target:  5'- aGCCCguUGGCGGCGACGGgGUAGgcauCGAg- -3'
miRNA:   3'- -CGGG--GCUGCUGCUGCUgCGUU----GCUaa -5'
12579 5' -55.3 NC_003345.1 + 13548 0.67 0.746521
Target:  5'- aGCUUCGAUGAaauguccgaguucaUGGCGGCGCuguACGAUa -3'
miRNA:   3'- -CGGGGCUGCU--------------GCUGCUGCGu--UGCUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.