miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12580 3' -51.2 NC_003345.1 + 46899 0.66 0.957604
Target:  5'- cUUUGACGACggcgaGGGCGCGGucguGGAGgaGAACc -3'
miRNA:   3'- -AGACUGUUG-----UCUGUGCC----UCUCg-CUUG- -5'
12580 3' -51.2 NC_003345.1 + 20231 0.66 0.953433
Target:  5'- --cGGgGACGGACuugccACGGAGGuCGAACa -3'
miRNA:   3'- agaCUgUUGUCUG-----UGCCUCUcGCUUG- -5'
12580 3' -51.2 NC_003345.1 + 73840 0.66 0.953433
Target:  5'- -aUGGCGGCGGAgACucaGAGAGCcAGCg -3'
miRNA:   3'- agACUGUUGUCUgUGc--CUCUCGcUUG- -5'
12580 3' -51.2 NC_003345.1 + 60709 0.66 0.948993
Target:  5'- uUCUGGCcgGAUggaAGGCGCGGgauucggcacgAGuGCGAACg -3'
miRNA:   3'- -AGACUG--UUG---UCUGUGCC-----------UCuCGCUUG- -5'
12580 3' -51.2 NC_003345.1 + 18824 0.66 0.941322
Target:  5'- --cGACAGCAGGCguacaccaugaccucGaacccCGGAGAGgGAGCu -3'
miRNA:   3'- agaCUGUUGUCUG---------------U-----GCCUCUCgCUUG- -5'
12580 3' -51.2 NC_003345.1 + 30617 0.67 0.928482
Target:  5'- -gUGACGACGGAgACGGucugcuuuAGCGAGa -3'
miRNA:   3'- agACUGUUGUCUgUGCCuc------UCGCUUg -5'
12580 3' -51.2 NC_003345.1 + 23884 0.67 0.928482
Target:  5'- --cGACGugGGGCcggacgcuccACGGAGGGCaAGCa -3'
miRNA:   3'- agaCUGUugUCUG----------UGCCUCUCGcUUG- -5'
12580 3' -51.2 NC_003345.1 + 77537 0.67 0.916548
Target:  5'- --aGACgGACGGGCAgGGGGcAGgGGACg -3'
miRNA:   3'- agaCUG-UUGUCUGUgCCUC-UCgCUUG- -5'
12580 3' -51.2 NC_003345.1 + 250 0.67 0.916548
Target:  5'- --aGACgGACGGGCAgGGGGcAGgGGACg -3'
miRNA:   3'- agaCUG-UUGUCUGUgCCUC-UCgCUUG- -5'
12580 3' -51.2 NC_003345.1 + 39081 0.67 0.916548
Target:  5'- aUUUGACugaauACAu-CACGGGGAGUGAGa -3'
miRNA:   3'- -AGACUGu----UGUcuGUGCCUCUCGCUUg -5'
12580 3' -51.2 NC_003345.1 + 58739 0.67 0.903498
Target:  5'- gUUUGGCAAC-GACACcGAGAacgauauugugGCGAGCu -3'
miRNA:   3'- -AGACUGUUGuCUGUGcCUCU-----------CGCUUG- -5'
12580 3' -51.2 NC_003345.1 + 22149 0.68 0.889353
Target:  5'- aCUuGCGugGGAaucCACGGAGAG-GAGCa -3'
miRNA:   3'- aGAcUGUugUCU---GUGCCUCUCgCUUG- -5'
12580 3' -51.2 NC_003345.1 + 63417 0.68 0.881879
Target:  5'- gCUGGcCGAgGGGC-CGGuGAGCGAGg -3'
miRNA:   3'- aGACU-GUUgUCUGuGCCuCUCGCUUg -5'
12580 3' -51.2 NC_003345.1 + 55760 0.69 0.85792
Target:  5'- aCUGACGGCGGAUACGGuca-CGGAa -3'
miRNA:   3'- aGACUGUUGUCUGUGCCucucGCUUg -5'
12580 3' -51.2 NC_003345.1 + 45009 0.69 0.849445
Target:  5'- uUCcGAUAccACAGACucguCGGGGAGUGGAa -3'
miRNA:   3'- -AGaCUGU--UGUCUGu---GCCUCUCGCUUg -5'
12580 3' -51.2 NC_003345.1 + 444 0.69 0.83181
Target:  5'- --cGGgGAgAGACGgGGAGAGaCGGACg -3'
miRNA:   3'- agaCUgUUgUCUGUgCCUCUC-GCUUG- -5'
12580 3' -51.2 NC_003345.1 + 70667 0.7 0.803783
Target:  5'- gUUGugAAC-GACgACGGAGAGCcuGAACu -3'
miRNA:   3'- aGACugUUGuCUG-UGCCUCUCG--CUUG- -5'
12580 3' -51.2 NC_003345.1 + 65468 0.71 0.753576
Target:  5'- gUCUGACAACGGACuucgacuCGGAacacaucgaccuGAGCuGGCg -3'
miRNA:   3'- -AGACUGUUGUCUGu------GCCU------------CUCGcUUG- -5'
12580 3' -51.2 NC_003345.1 + 21563 0.78 0.368213
Target:  5'- cCUGccCGAC-GACGCGGAGAGCGAAg -3'
miRNA:   3'- aGACu-GUUGuCUGUGCCUCUCGCUUg -5'
12580 3' -51.2 NC_003345.1 + 76917 1.1 0.003472
Target:  5'- cUCUGACAACAGACACGGAGAGCGAACc -3'
miRNA:   3'- -AGACUGUUGUCUGUGCCUCUCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.