miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12581 5' -57.2 NC_003345.1 + 927 0.67 0.693032
Target:  5'- uUCCGUCUCcCCGG-UCgGcCCGUa- -3'
miRNA:   3'- cAGGCAGAGaGGCCaAGgCaGGCAga -5'
12581 5' -57.2 NC_003345.1 + 76531 0.67 0.682657
Target:  5'- aUCU-UCUCUCUGGUUCUGuuuUCUGUCg -3'
miRNA:   3'- cAGGcAGAGAGGCCAAGGC---AGGCAGa -5'
12581 5' -57.2 NC_003345.1 + 32447 0.67 0.673282
Target:  5'- uGUCCGUaCUCggggaauccuucgccCCGGU--CGUCCGUCUc -3'
miRNA:   3'- -CAGGCA-GAGa--------------GGCCAagGCAGGCAGA- -5'
12581 5' -57.2 NC_003345.1 + 3474 0.68 0.598849
Target:  5'- -gCCGcUCUCUccgCCGGUUCCcUCCGUg- -3'
miRNA:   3'- caGGC-AGAGA---GGCCAAGGcAGGCAga -5'
12581 5' -57.2 NC_003345.1 + 51750 0.68 0.598849
Target:  5'- --aCGga-CUCCGGUUCUGUCCGUa- -3'
miRNA:   3'- cagGCagaGAGGCCAAGGCAGGCAga -5'
12581 5' -57.2 NC_003345.1 + 75645 0.7 0.4967
Target:  5'- uUCCGUCgcgCUCgCGGUcuUCuCGUCCGUg- -3'
miRNA:   3'- cAGGCAGa--GAG-GCCA--AG-GCAGGCAga -5'
12581 5' -57.2 NC_003345.1 + 21027 0.71 0.457994
Target:  5'- aGUagGUUUCUCUGGUUCUGUuuGUCa -3'
miRNA:   3'- -CAggCAGAGAGGCCAAGGCAggCAGa -5'
12581 5' -57.2 NC_003345.1 + 77452 0.72 0.411986
Target:  5'- cGUCCGUCUCUCCc---CUGcCCGUCUc -3'
miRNA:   3'- -CAGGCAGAGAGGccaaGGCaGGCAGA- -5'
12581 5' -57.2 NC_003345.1 + 165 0.72 0.411986
Target:  5'- cGUCCGUCUCUCCc---CUGcCCGUCUc -3'
miRNA:   3'- -CAGGCAGAGAGGccaaGGCaGGCAGA- -5'
12581 5' -57.2 NC_003345.1 + 795 0.73 0.321517
Target:  5'- cUCCGgguaguUCUCUCCGGUUCCGgcccCUGUUa -3'
miRNA:   3'- cAGGC------AGAGAGGCCAAGGCa---GGCAGa -5'
12581 5' -57.2 NC_003345.1 + 354 0.83 0.08188
Target:  5'- -cCCGUCUCUCCccgUCCGUCCGUCUc -3'
miRNA:   3'- caGGCAGAGAGGccaAGGCAGGCAGA- -5'
12581 5' -57.2 NC_003345.1 + 324 1.07 0.001614
Target:  5'- cGUCCGUCUCUCCGGUUCCGUCCGUCUc -3'
miRNA:   3'- -CAGGCAGAGAGGCCAAGGCAGGCAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.