Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12581 | 5' | -57.2 | NC_003345.1 | + | 77452 | 0.72 | 0.411986 |
Target: 5'- cGUCCGUCUCUCCc---CUGcCCGUCUc -3' miRNA: 3'- -CAGGCAGAGAGGccaaGGCaGGCAGA- -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 76531 | 0.67 | 0.682657 |
Target: 5'- aUCU-UCUCUCUGGUUCUGuuuUCUGUCg -3' miRNA: 3'- cAGGcAGAGAGGCCAAGGC---AGGCAGa -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 75645 | 0.7 | 0.4967 |
Target: 5'- uUCCGUCgcgCUCgCGGUcuUCuCGUCCGUg- -3' miRNA: 3'- cAGGCAGa--GAG-GCCA--AG-GCAGGCAga -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 51750 | 0.68 | 0.598849 |
Target: 5'- --aCGga-CUCCGGUUCUGUCCGUa- -3' miRNA: 3'- cagGCagaGAGGCCAAGGCAGGCAga -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 32447 | 0.67 | 0.673282 |
Target: 5'- uGUCCGUaCUCggggaauccuucgccCCGGU--CGUCCGUCUc -3' miRNA: 3'- -CAGGCA-GAGa--------------GGCCAagGCAGGCAGA- -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 21027 | 0.71 | 0.457994 |
Target: 5'- aGUagGUUUCUCUGGUUCUGUuuGUCa -3' miRNA: 3'- -CAggCAGAGAGGCCAAGGCAggCAGa -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 3474 | 0.68 | 0.598849 |
Target: 5'- -gCCGcUCUCUccgCCGGUUCCcUCCGUg- -3' miRNA: 3'- caGGC-AGAGA---GGCCAAGGcAGGCAga -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 927 | 0.67 | 0.693032 |
Target: 5'- uUCCGUCUCcCCGG-UCgGcCCGUa- -3' miRNA: 3'- cAGGCAGAGaGGCCaAGgCaGGCAga -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 795 | 0.73 | 0.321517 |
Target: 5'- cUCCGgguaguUCUCUCCGGUUCCGgcccCUGUUa -3' miRNA: 3'- cAGGC------AGAGAGGCCAAGGCa---GGCAGa -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 354 | 0.83 | 0.08188 |
Target: 5'- -cCCGUCUCUCCccgUCCGUCCGUCUc -3' miRNA: 3'- caGGCAGAGAGGccaAGGCAGGCAGA- -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 324 | 1.07 | 0.001614 |
Target: 5'- cGUCCGUCUCUCCGGUUCCGUCCGUCUc -3' miRNA: 3'- -CAGGCAGAGAGGCCAAGGCAGGCAGA- -5' |
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12581 | 5' | -57.2 | NC_003345.1 | + | 165 | 0.72 | 0.411986 |
Target: 5'- cGUCCGUCUCUCCc---CUGcCCGUCUc -3' miRNA: 3'- -CAGGCAGAGAGGccaaGGCaGGCAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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