Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12582 | 5' | -62.2 | NC_003345.1 | + | 830 | 1.12 | 0.000292 |
Target: 5'- cGGGCCGACCGGGGAGACGGAACCGGGg -3' miRNA: 3'- -CCCGGCUGGCCCCUCUGCCUUGGCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 67659 | 0.66 | 0.544904 |
Target: 5'- gGGGCUuccucUCGGGG-GAauaGGAACaCGGGg -3' miRNA: 3'- -CCCGGcu---GGCCCCuCUg--CCUUG-GCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 37789 | 0.66 | 0.496917 |
Target: 5'- aGGuGCgCGACCGGGuuccGAUGGGGaCGGGu -3' miRNA: 3'- -CC-CG-GCUGGCCCcu--CUGCCUUgGCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 76779 | 0.67 | 0.459941 |
Target: 5'- -uGCUaaGCCGGGGAGcgcacgacacGCGaGGGCCGGGu -3' miRNA: 3'- ccCGGc-UGGCCCCUC----------UGC-CUUGGCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 33072 | 0.67 | 0.450029 |
Target: 5'- cGGGCCGaccgccaacccGCCGGaGGAaaccgagaaguacGACGGGGCCu-- -3' miRNA: 3'- -CCCGGC-----------UGGCC-CCU-------------CUGCCUUGGccc -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 1333 | 0.69 | 0.374477 |
Target: 5'- aGGCCcgaaaGCgGGGGAGACGGcccCCGuGGu -3' miRNA: 3'- cCCGGc----UGgCCCCUCUGCCuu-GGC-CC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 1069 | 0.7 | 0.320678 |
Target: 5'- aGGCCcgucuuaguACgGGGGAGAUuuaccggcccuuaGGGGCCGGGg -3' miRNA: 3'- cCCGGc--------UGgCCCCUCUG-------------CCUUGGCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 443 | 0.72 | 0.221774 |
Target: 5'- gGGGagaGACgGGGaGAGACGGAcggaACCGGa -3' miRNA: 3'- -CCCgg-CUGgCCC-CUCUGCCU----UGGCCc -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 35289 | 0.71 | 0.261707 |
Target: 5'- -cGCCGA-UGGGGAGAacGAACCGGGc -3' miRNA: 3'- ccCGGCUgGCCCCUCUgcCUUGGCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 1367 | 0.71 | 0.269113 |
Target: 5'- cGGGCCGuacuucaaacguaacACCGGGaaacacguuCGGGGCCGGGc -3' miRNA: 3'- -CCCGGC---------------UGGCCCcucu-----GCCUUGGCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 60797 | 0.7 | 0.328621 |
Target: 5'- gGGGgCGAuuCCGGuGGAGAC---ACCGGGa -3' miRNA: 3'- -CCCgGCU--GGCC-CCUCUGccuUGGCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 48681 | 0.7 | 0.328621 |
Target: 5'- cGGCUGGCCGGGG---CGGuucAUCGGGu -3' miRNA: 3'- cCCGGCUGGCCCCucuGCCu--UGGCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 3021 | 0.69 | 0.335968 |
Target: 5'- aGGCCcuuCCGGGGAGucgaacccCGGAGCCGc- -3' miRNA: 3'- cCCGGcu-GGCCCCUCu-------GCCUUGGCcc -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 77615 | 0.68 | 0.390696 |
Target: 5'- cGGGCagggGGCgGGGGgagAGACGGcccGCgCGGGg -3' miRNA: 3'- -CCCGg---CUGgCCCC---UCUGCCu--UG-GCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 328 | 0.68 | 0.390696 |
Target: 5'- cGGGCagggGGCgGGGGgagAGACGGcccGCgCGGGg -3' miRNA: 3'- -CCCGg---CUGgCCCC---UCUGCCu--UG-GCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 916 | 0.68 | 0.398142 |
Target: 5'- cGGUCGGCCcguaacaGGGGc--CGGAACCGGa -3' miRNA: 3'- cCCGGCUGG-------CCCCucuGCCUUGGCCc -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 31109 | 0.68 | 0.407366 |
Target: 5'- --cCCGACCGGGGA-ACGGAuguucgucgUCGGGg -3' miRNA: 3'- cccGGCUGGCCCCUcUGCCUu--------GGCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 77445 | 0.68 | 0.415867 |
Target: 5'- aGGGUacaagcccgagCGACgGGGGAcAgGGGACgGGGg -3' miRNA: 3'- -CCCG-----------GCUGgCCCCUcUgCCUUGgCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 158 | 0.68 | 0.415867 |
Target: 5'- aGGGUacaagcccgagCGACgGGGGAcAgGGGACgGGGg -3' miRNA: 3'- -CCCG-----------GCUGgCCCCUcUgCCUUGgCCC- -5' |
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12582 | 5' | -62.2 | NC_003345.1 | + | 77570 | 0.78 | 0.097014 |
Target: 5'- gGGGCCGACCGGcccgaGAGACGG-GCaGGGg -3' miRNA: 3'- -CCCGGCUGGCCc----CUCUGCCuUGgCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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