Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12583 | 5' | -55.7 | NC_003345.1 | + | 5093 | 0.66 | 0.775451 |
Target: 5'- aCGGCuCCU--GCCGCugguGGUUCGUCg -3' miRNA: 3'- -GCCG-GGAuuUGGUGuau-CCGGGCAGa -5' |
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12583 | 5' | -55.7 | NC_003345.1 | + | 75323 | 0.66 | 0.771517 |
Target: 5'- gCGGCCCcgguuacgccgggGAACCGCAcauuGGUCgGUCa -3' miRNA: 3'- -GCCGGGa------------UUUGGUGUau--CCGGgCAGa -5' |
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12583 | 5' | -55.7 | NC_003345.1 | + | 12089 | 0.66 | 0.755567 |
Target: 5'- uCGGUUCcGGGCCACGaacGGCUCGUCc -3' miRNA: 3'- -GCCGGGaUUUGGUGUau-CCGGGCAGa -5' |
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12583 | 5' | -55.7 | NC_003345.1 | + | 2545 | 0.66 | 0.755567 |
Target: 5'- gCGGCCUUuacuuGCCACuacugggacgAUGGGuucCCCGUCg -3' miRNA: 3'- -GCCGGGAuu---UGGUG----------UAUCC---GGGCAGa -5' |
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12583 | 5' | -55.7 | NC_003345.1 | + | 26319 | 0.67 | 0.724867 |
Target: 5'- aCGGCUgauaCUGAACguCGUAGaGCCaCGUCa -3' miRNA: 3'- -GCCGG----GAUUUGguGUAUC-CGG-GCAGa -5' |
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12583 | 5' | -55.7 | NC_003345.1 | + | 62849 | 0.68 | 0.682747 |
Target: 5'- -cGCCCggAGGCCAgCGUAGGCCCc--- -3' miRNA: 3'- gcCGGGa-UUUGGU-GUAUCCGGGcaga -5' |
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12583 | 5' | -55.7 | NC_003345.1 | + | 33223 | 0.72 | 0.424611 |
Target: 5'- aGGCCgUUGAACgccgggaaCACGUAGGCcCCGUCg -3' miRNA: 3'- gCCGG-GAUUUG--------GUGUAUCCG-GGCAGa -5' |
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12583 | 5' | -55.7 | NC_003345.1 | + | 1052 | 1.07 | 0.00174 |
Target: 5'- cCGGCCCUAAACCACAUAGGCCCGUCUu -3' miRNA: 3'- -GCCGGGAUUUGGUGUAUCCGGGCAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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