miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12583 5' -55.7 NC_003345.1 + 5093 0.66 0.775451
Target:  5'- aCGGCuCCU--GCCGCugguGGUUCGUCg -3'
miRNA:   3'- -GCCG-GGAuuUGGUGuau-CCGGGCAGa -5'
12583 5' -55.7 NC_003345.1 + 75323 0.66 0.771517
Target:  5'- gCGGCCCcgguuacgccgggGAACCGCAcauuGGUCgGUCa -3'
miRNA:   3'- -GCCGGGa------------UUUGGUGUau--CCGGgCAGa -5'
12583 5' -55.7 NC_003345.1 + 12089 0.66 0.755567
Target:  5'- uCGGUUCcGGGCCACGaacGGCUCGUCc -3'
miRNA:   3'- -GCCGGGaUUUGGUGUau-CCGGGCAGa -5'
12583 5' -55.7 NC_003345.1 + 2545 0.66 0.755567
Target:  5'- gCGGCCUUuacuuGCCACuacugggacgAUGGGuucCCCGUCg -3'
miRNA:   3'- -GCCGGGAuu---UGGUG----------UAUCC---GGGCAGa -5'
12583 5' -55.7 NC_003345.1 + 26319 0.67 0.724867
Target:  5'- aCGGCUgauaCUGAACguCGUAGaGCCaCGUCa -3'
miRNA:   3'- -GCCGG----GAUUUGguGUAUC-CGG-GCAGa -5'
12583 5' -55.7 NC_003345.1 + 62849 0.68 0.682747
Target:  5'- -cGCCCggAGGCCAgCGUAGGCCCc--- -3'
miRNA:   3'- gcCGGGa-UUUGGU-GUAUCCGGGcaga -5'
12583 5' -55.7 NC_003345.1 + 33223 0.72 0.424611
Target:  5'- aGGCCgUUGAACgccgggaaCACGUAGGCcCCGUCg -3'
miRNA:   3'- gCCGG-GAUUUG--------GUGUAUCCG-GGCAGa -5'
12583 5' -55.7 NC_003345.1 + 1052 1.07 0.00174
Target:  5'- cCGGCCCUAAACCACAUAGGCCCGUCUu -3'
miRNA:   3'- -GCCGGGAUUUGGUGUAUCCGGGCAGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.