Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12586 | 3' | -52.3 | NC_003345.1 | + | 4396 | 0.66 | 0.883883 |
Target: 5'- -aCUCcGUAGCG-GAGCUuCUGGUAGc -3' miRNA: 3'- cgGAGuCAUCGCaUUCGAuGACCGUU- -5' |
|||||||
12586 | 3' | -52.3 | NC_003345.1 | + | 2345 | 0.69 | 0.733197 |
Target: 5'- aGCCgaugAGUuccAGCGUGAGCUACUGcucucGCAGg -3' miRNA: 3'- -CGGag--UCA---UCGCAUUCGAUGAC-----CGUU- -5' |
|||||||
12586 | 3' | -52.3 | NC_003345.1 | + | 50364 | 0.7 | 0.655985 |
Target: 5'- cGCCccggCGGUGGUGgcggugGAGgUGCUGGCGg -3' miRNA: 3'- -CGGa---GUCAUCGCa-----UUCgAUGACCGUu -5' |
|||||||
12586 | 3' | -52.3 | NC_003345.1 | + | 2941 | 1.08 | 0.002453 |
Target: 5'- gGCCUCAGUAGCGUAAGCUACUGGCAAg -3' miRNA: 3'- -CGGAGUCAUCGCAUUCGAUGACCGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home