miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12586 5' -48.5 NC_003345.1 + 22784 0.66 0.990338
Target:  5'- --cCGCCGuaccgaGAGCgCGGGAgUgaGUAGCCg -3'
miRNA:   3'- aaaGCGGU------UUUGaGCCCUgA--CAUUGG- -5'
12586 5' -48.5 NC_003345.1 + 17805 0.66 0.98725
Target:  5'- -cUCGCCAcuucuccggaaGAACUCGGGuucGUAcuuCCa -3'
miRNA:   3'- aaAGCGGU-----------UUUGAGCCCugaCAUu--GG- -5'
12586 5' -48.5 NC_003345.1 + 62990 0.66 0.98725
Target:  5'- -gUCGUCuacccuGCUCGGGACUcugagGGCUa -3'
miRNA:   3'- aaAGCGGuuu---UGAGCCCUGAca---UUGG- -5'
12586 5' -48.5 NC_003345.1 + 27733 0.66 0.985445
Target:  5'- ---gGCCGAAugUUGGGGuCUGaaaAACCc -3'
miRNA:   3'- aaagCGGUUUugAGCCCU-GACa--UUGG- -5'
12586 5' -48.5 NC_003345.1 + 50357 0.66 0.985254
Target:  5'- cUUCGCCA----UCGGGGuCUGcgucacaUAGCCa -3'
miRNA:   3'- aAAGCGGUuuugAGCCCU-GAC-------AUUGG- -5'
12586 5' -48.5 NC_003345.1 + 73522 0.67 0.983451
Target:  5'- -gUCGgCAGAACcCGGcGGCgGUGGCUg -3'
miRNA:   3'- aaAGCgGUUUUGaGCC-CUGaCAUUGG- -5'
12586 5' -48.5 NC_003345.1 + 6565 0.67 0.981258
Target:  5'- ---aGCCGAGGCguucugUGaGGACUGUAAUa -3'
miRNA:   3'- aaagCGGUUUUGa-----GC-CCUGACAUUGg -5'
12586 5' -48.5 NC_003345.1 + 62457 0.67 0.976227
Target:  5'- -gUCGCaucGACUCGGGAC----ACCg -3'
miRNA:   3'- aaAGCGguuUUGAGCCCUGacauUGG- -5'
12586 5' -48.5 NC_003345.1 + 32039 0.67 0.973371
Target:  5'- gUUCGCCcGAACaguuuggcuuUCGGGG-UGUAAUCu -3'
miRNA:   3'- aAAGCGGuUUUG----------AGCCCUgACAUUGG- -5'
12586 5' -48.5 NC_003345.1 + 68663 0.68 0.96332
Target:  5'- -gUCGCCA----UCGGGAUgugGUAGuCCa -3'
miRNA:   3'- aaAGCGGUuuugAGCCCUGa--CAUU-GG- -5'
12586 5' -48.5 NC_003345.1 + 51867 0.68 0.96332
Target:  5'- -gUUGaCCccGACuUCGGGGCUGgAACCg -3'
miRNA:   3'- aaAGC-GGuuUUG-AGCCCUGACaUUGG- -5'
12586 5' -48.5 NC_003345.1 + 46093 0.69 0.950886
Target:  5'- gUUCGCCGcucGCaCGGGGCU-UGACCc -3'
miRNA:   3'- aAAGCGGUuu-UGaGCCCUGAcAUUGG- -5'
12586 5' -48.5 NC_003345.1 + 21651 0.69 0.935909
Target:  5'- -aUCGCCA--ACUCGGGcggcgacgacgACgGUGACUc -3'
miRNA:   3'- aaAGCGGUuuUGAGCCC-----------UGaCAUUGG- -5'
12586 5' -48.5 NC_003345.1 + 40265 0.69 0.935909
Target:  5'- aUUCGCCGcuACUucCGcuACUGUAACCa -3'
miRNA:   3'- aAAGCGGUuuUGA--GCccUGACAUUGG- -5'
12586 5' -48.5 NC_003345.1 + 72013 0.69 0.935909
Target:  5'- -aUCGUCAcgGGACUCGGGAUUccGGCa -3'
miRNA:   3'- aaAGCGGU--UUUGAGCCCUGAcaUUGg -5'
12586 5' -48.5 NC_003345.1 + 18337 0.69 0.935365
Target:  5'- -gUCGUCAAGugUCccguugaGGGA-UGUGACCa -3'
miRNA:   3'- aaAGCGGUUUugAG-------CCCUgACAUUGG- -5'
12586 5' -48.5 NC_003345.1 + 8774 0.7 0.924469
Target:  5'- -cUCGUCAAucACUCGGcagaUGUGACCg -3'
miRNA:   3'- aaAGCGGUUu-UGAGCCcug-ACAUUGG- -5'
12586 5' -48.5 NC_003345.1 + 72495 0.7 0.923866
Target:  5'- --gCGCCAAAACUCGGaG-UUGUggaguagaagggcGACCg -3'
miRNA:   3'- aaaGCGGUUUUGAGCC-CuGACA-------------UUGG- -5'
12586 5' -48.5 NC_003345.1 + 71449 0.7 0.905113
Target:  5'- --gCGCCccgacuCUCGGGACU-UGACCu -3'
miRNA:   3'- aaaGCGGuuuu--GAGCCCUGAcAUUGG- -5'
12586 5' -48.5 NC_003345.1 + 60131 0.73 0.803478
Target:  5'- --cCGCCAcGACUCGGccauACUGUuACCg -3'
miRNA:   3'- aaaGCGGUuUUGAGCCc---UGACAuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.