Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12587 | 3' | -55.4 | NC_003345.1 | + | 3493 | 1.09 | 0.001549 |
Target: 5'- cAGCUCAUCACGGUGGUCAUCGACCCGa -3' miRNA: 3'- -UCGAGUAGUGCCACCAGUAGCUGGGC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 8078 | 0.67 | 0.741866 |
Target: 5'- cGGUUCAUC-CGGUguggaaggccGGUCAguugaccgaccccgaCGACCCGa -3' miRNA: 3'- -UCGAGUAGuGCCA----------CCAGUa--------------GCUGGGC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 15096 | 0.66 | 0.790174 |
Target: 5'- uGCU-AUCuCGGUGGacUCGUCG-CCCGu -3' miRNA: 3'- uCGAgUAGuGCCACC--AGUAGCuGGGC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 21843 | 0.71 | 0.50964 |
Target: 5'- cAGCUCGUCGCuGGUGaaGUCggUGACgCCGa -3' miRNA: 3'- -UCGAGUAGUG-CCAC--CAGuaGCUG-GGC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 24344 | 0.66 | 0.799614 |
Target: 5'- uAGCUCAacuggacgaaaUCGCaGGcGGaaucaaCAUCGACCCGu -3' miRNA: 3'- -UCGAGU-----------AGUG-CCaCCa-----GUAGCUGGGC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 35050 | 0.69 | 0.635736 |
Target: 5'- aAGCUCAugUgACGGUGGcgCGUC-ACCUGa -3' miRNA: 3'- -UCGAGU--AgUGCCACCa-GUAGcUGGGC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 35719 | 0.67 | 0.770839 |
Target: 5'- uGUUCAUCcacaauGCGGgcuUCAUCGACCCc -3' miRNA: 3'- uCGAGUAG------UGCCaccAGUAGCUGGGc -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 36191 | 0.7 | 0.591992 |
Target: 5'- aAGCUCGUCgggauguucucgaACGGUGuGaaAUCGACUCGa -3' miRNA: 3'- -UCGAGUAG-------------UGCCAC-CagUAGCUGGGC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 36461 | 0.69 | 0.635736 |
Target: 5'- cGUUCGUCACGGU--UCGaccaCGGCCCGa -3' miRNA: 3'- uCGAGUAGUGCCAccAGUa---GCUGGGC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 37599 | 0.68 | 0.709931 |
Target: 5'- aAGUUCAugccggacugUCACGG-GGgacUCGGCCCGg -3' miRNA: 3'- -UCGAGU----------AGUGCCaCCaguAGCUGGGC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 45472 | 0.69 | 0.635736 |
Target: 5'- gAGC-CGUCACGGUacacGGUCA--GGCCCu -3' miRNA: 3'- -UCGaGUAGUGCCA----CCAGUagCUGGGc -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 46227 | 0.66 | 0.808888 |
Target: 5'- gAGgUCG-CGCGGUGcGUCAugcgauacaUCGACCgGa -3' miRNA: 3'- -UCgAGUaGUGCCAC-CAGU---------AGCUGGgC- -5' |
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12587 | 3' | -55.4 | NC_003345.1 | + | 50332 | 0.66 | 0.780579 |
Target: 5'- cGGCUCcuucggggGUCGCGGUGGUaauggaggCAaCGGCUCa -3' miRNA: 3'- -UCGAG--------UAGUGCCACCA--------GUaGCUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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