Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12587 | 5' | -54.3 | NC_003345.1 | + | 3528 | 1.13 | 0.001155 |
Target: 5'- aGCCAUAGUGACGACCUACCGAGGGACg -3' miRNA: 3'- -CGGUAUCACUGCUGGAUGGCUCCCUG- -5' |
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12587 | 5' | -54.3 | NC_003345.1 | + | 30317 | 0.66 | 0.83491 |
Target: 5'- cGCuCGUGGggaugGAaaguacgaaagccCGACC-ACCGAGGGAg -3' miRNA: 3'- -CG-GUAUCa----CU-------------GCUGGaUGGCUCCCUg -5' |
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12587 | 5' | -54.3 | NC_003345.1 | + | 34379 | 0.66 | 0.852745 |
Target: 5'- uGCgGUGGauauUGACGuugacGCCgcgAUUGAGGGACa -3' miRNA: 3'- -CGgUAUC----ACUGC-----UGGa--UGGCUCCCUG- -5' |
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12587 | 5' | -54.3 | NC_003345.1 | + | 63668 | 0.66 | 0.860898 |
Target: 5'- --aGUGGgGGCGcuCCUGCCGAcguGGGACu -3' miRNA: 3'- cggUAUCaCUGCu-GGAUGGCU---CCCUG- -5' |
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12587 | 5' | -54.3 | NC_003345.1 | + | 59331 | 0.66 | 0.844369 |
Target: 5'- gGUCGgu-UGACGGCCcgACCGAgcagaagauguGGGACg -3' miRNA: 3'- -CGGUaucACUGCUGGa-UGGCU-----------CCCUG- -5' |
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12587 | 5' | -54.3 | NC_003345.1 | + | 18923 | 0.67 | 0.826986 |
Target: 5'- gGUCAUGGUGuACG-CCUGCUGucGGGu -3' miRNA: 3'- -CGGUAUCAC-UGCuGGAUGGCucCCUg -5' |
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12587 | 5' | -54.3 | NC_003345.1 | + | 21885 | 0.67 | 0.815261 |
Target: 5'- cGCCAUgaagucgauaaucuGGUcGGCGGCCUGC---GGGACa -3' miRNA: 3'- -CGGUA--------------UCA-CUGCUGGAUGgcuCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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