miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12589 3' -58 NC_003345.1 + 33859 0.66 0.697188
Target:  5'- gAC-GAGGGGAUgGACuACGAcGCCACCc -3'
miRNA:   3'- -UGcCUCCCCUG-CUGcUGCU-UGGUGGu -5'
12589 3' -58 NC_003345.1 + 29515 0.66 0.676547
Target:  5'- uCGGAugauuuccucGGGACGGuCGugGAACCAgCAg -3'
miRNA:   3'- uGCCUc---------CCCUGCU-GCugCUUGGUgGU- -5'
12589 3' -58 NC_003345.1 + 52421 0.66 0.666165
Target:  5'- uUGGAaacaaGGGGACGACGugGcuGAagaaCACCu -3'
miRNA:   3'- uGCCU-----CCCCUGCUGCugC--UUg---GUGGu -5'
12589 3' -58 NC_003345.1 + 77532 0.67 0.655754
Target:  5'- gACGGgcAGGGGGCaGGgGACgGAACCAgCu -3'
miRNA:   3'- -UGCC--UCCCCUG-CUgCUG-CUUGGUgGu -5'
12589 3' -58 NC_003345.1 + 245 0.67 0.655754
Target:  5'- gACGGgcAGGGGGCaGGgGACgGAACCAgCu -3'
miRNA:   3'- -UGCC--UCCCCUG-CUgCUG-CUUGGUgGu -5'
12589 3' -58 NC_003345.1 + 74848 0.67 0.655754
Target:  5'- cACGcaucGAGGGGGCGA-GACG-ACUACUg -3'
miRNA:   3'- -UGC----CUCCCCUGCUgCUGCuUGGUGGu -5'
12589 3' -58 NC_003345.1 + 75562 0.67 0.612957
Target:  5'- gGCGGAGGaagaagcacacauGGACGuugaccuguACGACGAGCUGgCAu -3'
miRNA:   3'- -UGCCUCC-------------CCUGC---------UGCUGCUUGGUgGU- -5'
12589 3' -58 NC_003345.1 + 11583 0.67 0.603577
Target:  5'- gAUGaGuGGGGACGGCGAa-GACCGCa- -3'
miRNA:   3'- -UGC-CuCCCCUGCUGCUgcUUGGUGgu -5'
12589 3' -58 NC_003345.1 + 69732 0.67 0.602536
Target:  5'- uGCGucGGcGGCGACGACGAugguguuACCAUCAa -3'
miRNA:   3'- -UGCcuCCcCUGCUGCUGCU-------UGGUGGU- -5'
12589 3' -58 NC_003345.1 + 55445 0.68 0.562179
Target:  5'- cCGGAGGGGGUGGCGGCGGuUCAg-- -3'
miRNA:   3'- uGCCUCCCCUGCUGCUGCUuGGUggu -5'
12589 3' -58 NC_003345.1 + 50774 0.68 0.561152
Target:  5'- aACGGcGGGGACGcUGGCGGGaguauauuuauucUCGCCAa -3'
miRNA:   3'- -UGCCuCCCCUGCuGCUGCUU-------------GGUGGU- -5'
12589 3' -58 NC_003345.1 + 3711 0.68 0.541756
Target:  5'- uCGGAGGGGACaaccgacuCGAUGugaguAACCACUAa -3'
miRNA:   3'- uGCCUCCCCUGcu------GCUGC-----UUGGUGGU- -5'
12589 3' -58 NC_003345.1 + 29254 0.69 0.51161
Target:  5'- gACGGAGagacGugGGCGACGAAgUGCCAc -3'
miRNA:   3'- -UGCCUCcc--CugCUGCUGCUUgGUGGU- -5'
12589 3' -58 NC_003345.1 + 33503 0.69 0.505663
Target:  5'- uUGGAuGGGcgcgguucuuccucuACGACGACGAuauuGCCGCCGc -3'
miRNA:   3'- uGCCUcCCC---------------UGCUGCUGCU----UGGUGGU- -5'
12589 3' -58 NC_003345.1 + 75689 0.7 0.472554
Target:  5'- uCGGuGGGGgagaaGCGGCGAUGAGCCGa-- -3'
miRNA:   3'- uGCCuCCCC-----UGCUGCUGCUUGGUggu -5'
12589 3' -58 NC_003345.1 + 20199 0.71 0.428676
Target:  5'- gUGGAGGaauagauGGACGACGACGAcgcucccuccgguggGgCCGCCGc -3'
miRNA:   3'- uGCCUCC-------CCUGCUGCUGCU---------------U-GGUGGU- -5'
12589 3' -58 NC_003345.1 + 46195 0.71 0.382204
Target:  5'- cCGGAgGGGGACGugGGCcucUCACCGg -3'
miRNA:   3'- uGCCU-CCCCUGCugCUGcuuGGUGGU- -5'
12589 3' -58 NC_003345.1 + 9348 0.71 0.382204
Target:  5'- uACGGAGaGGGugG-CGAcCGAuACUACCAc -3'
miRNA:   3'- -UGCCUC-CCCugCuGCU-GCU-UGGUGGU- -5'
12589 3' -58 NC_003345.1 + 40700 0.72 0.373819
Target:  5'- cGCGGgaacacagagugGGGGGAacgGACGAUGAACCaaACCGa -3'
miRNA:   3'- -UGCC------------UCCCCUg--CUGCUGCUUGG--UGGU- -5'
12589 3' -58 NC_003345.1 + 60801 0.73 0.297012
Target:  5'- -aGGAGGGGGCGAUuccgGugGAGaCACCGg -3'
miRNA:   3'- ugCCUCCCCUGCUG----CugCUUgGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.