Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12589 | 5' | -52.9 | NC_003345.1 | + | 11021 | 0.66 | 0.913199 |
Target: 5'- uCGUGAUuGUGGaCGAGGGACacgGACuCGa -3' miRNA: 3'- -GCACUAcCACCaGCUUCUUGg--CUG-GC- -5' |
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12589 | 5' | -52.9 | NC_003345.1 | + | 23649 | 0.67 | 0.886298 |
Target: 5'- --------aGGUCGAAGAAgCGACCGa -3' miRNA: 3'- gcacuaccaCCAGCUUCUUgGCUGGC- -5' |
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12589 | 5' | -52.9 | NC_003345.1 | + | 37315 | 0.68 | 0.863504 |
Target: 5'- gGUGAcuacugaGGUGGcuccaacagUCGGagcGGAACCGACCa -3' miRNA: 3'- gCACUa------CCACC---------AGCU---UCUUGGCUGGc -5' |
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12589 | 5' | -52.9 | NC_003345.1 | + | 55813 | 0.68 | 0.847144 |
Target: 5'- -cUGGUGGUGGUgCGAcagacgAGAGCCaACCc -3' miRNA: 3'- gcACUACCACCA-GCU------UCUUGGcUGGc -5' |
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12589 | 5' | -52.9 | NC_003345.1 | + | 50355 | 0.68 | 0.821008 |
Target: 5'- gGUGGUGGcGGUgGAGGuGCUGGCgGc -3' miRNA: 3'- gCACUACCaCCAgCUUCuUGGCUGgC- -5' |
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12589 | 5' | -52.9 | NC_003345.1 | + | 77026 | 0.69 | 0.80262 |
Target: 5'- cCGUGGaGGgagucucGGUCGggGAGCUGGUCGa -3' miRNA: 3'- -GCACUaCCa------CCAGCuuCUUGGCUGGC- -5' |
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12589 | 5' | -52.9 | NC_003345.1 | + | 45943 | 0.69 | 0.783549 |
Target: 5'- uCGUGAUGuuGUGGUUGcGGAuggggaagccACCGGCCc -3' miRNA: 3'- -GCACUAC--CACCAGCuUCU----------UGGCUGGc -5' |
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12589 | 5' | -52.9 | NC_003345.1 | + | 26819 | 0.71 | 0.712619 |
Target: 5'- cCGUGGauauUGGUGGg-GAAGAcgagacgcuuGCCGACCu -3' miRNA: 3'- -GCACU----ACCACCagCUUCU----------UGGCUGGc -5' |
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12589 | 5' | -52.9 | NC_003345.1 | + | 59340 | 0.72 | 0.659463 |
Target: 5'- aCGuUGAUGGgucGGUUGAcGGcCCGACCGa -3' miRNA: 3'- -GC-ACUACCa--CCAGCUuCUuGGCUGGC- -5' |
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12589 | 5' | -52.9 | NC_003345.1 | + | 5013 | 1.1 | 0.002594 |
Target: 5'- cCGUGAUGGUGGUCGAAGAACCGACCGg -3' miRNA: 3'- -GCACUACCACCAGCUUCUUGGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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