miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12589 5' -52.9 NC_003345.1 + 11021 0.66 0.913199
Target:  5'- uCGUGAUuGUGGaCGAGGGACacgGACuCGa -3'
miRNA:   3'- -GCACUAcCACCaGCUUCUUGg--CUG-GC- -5'
12589 5' -52.9 NC_003345.1 + 23649 0.67 0.886298
Target:  5'- --------aGGUCGAAGAAgCGACCGa -3'
miRNA:   3'- gcacuaccaCCAGCUUCUUgGCUGGC- -5'
12589 5' -52.9 NC_003345.1 + 37315 0.68 0.863504
Target:  5'- gGUGAcuacugaGGUGGcuccaacagUCGGagcGGAACCGACCa -3'
miRNA:   3'- gCACUa------CCACC---------AGCU---UCUUGGCUGGc -5'
12589 5' -52.9 NC_003345.1 + 55813 0.68 0.847144
Target:  5'- -cUGGUGGUGGUgCGAcagacgAGAGCCaACCc -3'
miRNA:   3'- gcACUACCACCA-GCU------UCUUGGcUGGc -5'
12589 5' -52.9 NC_003345.1 + 50355 0.68 0.821008
Target:  5'- gGUGGUGGcGGUgGAGGuGCUGGCgGc -3'
miRNA:   3'- gCACUACCaCCAgCUUCuUGGCUGgC- -5'
12589 5' -52.9 NC_003345.1 + 77026 0.69 0.80262
Target:  5'- cCGUGGaGGgagucucGGUCGggGAGCUGGUCGa -3'
miRNA:   3'- -GCACUaCCa------CCAGCuuCUUGGCUGGC- -5'
12589 5' -52.9 NC_003345.1 + 45943 0.69 0.783549
Target:  5'- uCGUGAUGuuGUGGUUGcGGAuggggaagccACCGGCCc -3'
miRNA:   3'- -GCACUAC--CACCAGCuUCU----------UGGCUGGc -5'
12589 5' -52.9 NC_003345.1 + 26819 0.71 0.712619
Target:  5'- cCGUGGauauUGGUGGg-GAAGAcgagacgcuuGCCGACCu -3'
miRNA:   3'- -GCACU----ACCACCagCUUCU----------UGGCUGGc -5'
12589 5' -52.9 NC_003345.1 + 59340 0.72 0.659463
Target:  5'- aCGuUGAUGGgucGGUUGAcGGcCCGACCGa -3'
miRNA:   3'- -GC-ACUACCa--CCAGCUuCUuGGCUGGC- -5'
12589 5' -52.9 NC_003345.1 + 5013 1.1 0.002594
Target:  5'- cCGUGAUGGUGGUCGAAGAACCGACCGg -3'
miRNA:   3'- -GCACUACCACCAGCUUCUUGGCUGGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.