miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1259 5' -56.6 NC_001317.1 + 276 0.66 0.479601
Target:  5'- cCUGCaGCGGCGAcaggucguuacGcacaaauaccuuUGCCACUUUCUCa -3'
miRNA:   3'- cGACG-CGCCGUU-----------C------------ACGGUGAAGGAGc -5'
1259 5' -56.6 NC_001317.1 + 15899 0.66 0.479601
Target:  5'- aUUGCGCGGCG-GUG-CugUUCCa-- -3'
miRNA:   3'- cGACGCGCCGUuCACgGugAAGGagc -5'
1259 5' -56.6 NC_001317.1 + 14590 0.66 0.458703
Target:  5'- -aUGCGCGGCuuaacgccGGUGaCCGCUUCggCa -3'
miRNA:   3'- cgACGCGCCGu-------UCAC-GGUGAAGgaGc -5'
1259 5' -56.6 NC_001317.1 + 16099 0.66 0.45767
Target:  5'- cCUGCGCGGCGucagucuggcggcGGUGgCGCagUCCgaggUCGa -3'
miRNA:   3'- cGACGCGCCGU-------------UCACgGUGa-AGG----AGC- -5'
1259 5' -56.6 NC_001317.1 + 5980 0.66 0.428294
Target:  5'- cGCUGCGCGGCuuGAGagGCCGagaCC-CGc -3'
miRNA:   3'- -CGACGCGCCG--UUCa-CGGUgaaGGaGC- -5'
1259 5' -56.6 NC_001317.1 + 16226 0.67 0.389668
Target:  5'- cCUGCGUGGUGAGUGCCGgguaggUCaugCGg -3'
miRNA:   3'- cGACGCGCCGUUCACGGUga----AGga-GC- -5'
1259 5' -56.6 NC_001317.1 + 24636 0.7 0.25937
Target:  5'- gGCUuCGCGGCGcAGUagcucgGCCGCUUCUUUGc -3'
miRNA:   3'- -CGAcGCGCCGU-UCA------CGGUGAAGGAGC- -5'
1259 5' -56.6 NC_001317.1 + 2363 0.7 0.252532
Target:  5'- cCUGCGCGGCAAaguccaUGCC-CUUCCa-- -3'
miRNA:   3'- cGACGCGCCGUUc-----ACGGuGAAGGagc -5'
1259 5' -56.6 NC_001317.1 + 6322 1.11 0.000208
Target:  5'- cGCUGCGCGGCAAGUGCCACUUCCUCGa -3'
miRNA:   3'- -CGACGCGCCGUUCACGGUGAAGGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.