Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12592 | 3' | -56.2 | NC_003345.1 | + | 45912 | 0.69 | 0.630558 |
Target: 5'- gACGACCUGcucgUGGAGUuuGACGACUa -3' miRNA: 3'- -UGUUGGGCug--ACUUCGggCUGCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 77594 | 0.69 | 0.619977 |
Target: 5'- gACGGCCCGcGC-GggGCaggggcaggggCCGAcCGGCCCg -3' miRNA: 3'- -UGUUGGGC-UGaCuuCG-----------GGCU-GCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 307 | 0.69 | 0.619977 |
Target: 5'- gACGGCCCGcGC-GggGCaggggcaggggCCGAcCGGCCCg -3' miRNA: 3'- -UGUUGGGC-UGaCuuCG-----------GGCU-GCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 15076 | 0.69 | 0.618919 |
Target: 5'- --cGCCCGugUucggagcGAAGCCCGccGCGACUg -3' miRNA: 3'- uguUGGGCugA-------CUUCGGGC--UGCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 53338 | 0.69 | 0.609406 |
Target: 5'- uCGACCCGAUguUGAuguuGCUCGugGAUUCc -3' miRNA: 3'- uGUUGGGCUG--ACUu---CGGGCugCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 38808 | 0.69 | 0.609406 |
Target: 5'- ----aCCGGCUGAAGCCCG-UGAUUa -3' miRNA: 3'- uguugGGCUGACUUCGGGCuGCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 7079 | 0.69 | 0.598852 |
Target: 5'- gAUAGCCCGACcGAAGaaCGACu-CCCg -3' miRNA: 3'- -UGUUGGGCUGaCUUCggGCUGcuGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 21275 | 0.69 | 0.598852 |
Target: 5'- --cAUCCGACUcGucGCCgGGCGACCg -3' miRNA: 3'- uguUGGGCUGA-CuuCGGgCUGCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 58232 | 0.69 | 0.576785 |
Target: 5'- aACAGCUCGACagccggaUGAAGCCCGGugggugguuccuUGACUUg -3' miRNA: 3'- -UGUUGGGCUG-------ACUUCGGGCU------------GCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 57924 | 0.7 | 0.567381 |
Target: 5'- gACcACuuGGC-GGcuCCCGACGACCCu -3' miRNA: 3'- -UGuUGggCUGaCUucGGGCUGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 20021 | 0.7 | 0.546631 |
Target: 5'- -gAACCCGGCUGAcuuggAGUUCGACcucCCCg -3' miRNA: 3'- ugUUGGGCUGACU-----UCGGGCUGcu-GGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 41469 | 0.7 | 0.545599 |
Target: 5'- uACGACCUGA--GAAGCgaguggacucuccCCGACGACCg -3' miRNA: 3'- -UGUUGGGCUgaCUUCG-------------GGCUGCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 12226 | 0.7 | 0.536346 |
Target: 5'- aACGACCCGACgccuGaCCUGAcCGACCa -3' miRNA: 3'- -UGUUGGGCUGacuuC-GGGCU-GCUGGg -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 8874 | 0.7 | 0.515985 |
Target: 5'- aGCGGCCCGAUU--AGCUCGGCcACCUc -3' miRNA: 3'- -UGUUGGGCUGAcuUCGGGCUGcUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 23881 | 0.71 | 0.505922 |
Target: 5'- ---uCCCGACgUGggGCCgGACGcUCCa -3' miRNA: 3'- uguuGGGCUG-ACuuCGGgCUGCuGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 28549 | 0.71 | 0.505922 |
Target: 5'- aACGACUCGAUgcgucaAAGCCCGAaGACUCg -3' miRNA: 3'- -UGUUGGGCUGac----UUCGGGCUgCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 32696 | 0.71 | 0.50492 |
Target: 5'- gGCAACaccuacaCCGGCUacgGcGGCCCGACGAUUCa -3' miRNA: 3'- -UGUUG-------GGCUGA---CuUCGGGCUGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 8196 | 0.71 | 0.486055 |
Target: 5'- uCGuCCCGACUucGAGGCUUccaacgaaGACGACCCg -3' miRNA: 3'- uGUuGGGCUGA--CUUCGGG--------CUGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 70390 | 0.72 | 0.456975 |
Target: 5'- cCGACCuCGAUgagaUGGAGgCUGACGACCUu -3' miRNA: 3'- uGUUGG-GCUG----ACUUCgGGCUGCUGGG- -5' |
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12592 | 3' | -56.2 | NC_003345.1 | + | 39506 | 0.72 | 0.456975 |
Target: 5'- -aGGCCCGACgUGGuuAGCCCaauacguaGCGACCCc -3' miRNA: 3'- ugUUGGGCUG-ACU--UCGGGc-------UGCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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