miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12592 5' -55.6 NC_003345.1 + 72523 0.66 0.793373
Target:  5'- aUGGA--GCUGGUC-GUUGAagacgagcaguuCCGACCg -3'
miRNA:   3'- cACCUucCGGCCAGuCAACU------------GGCUGG- -5'
12592 5' -55.6 NC_003345.1 + 36614 0.66 0.793373
Target:  5'- --cGAAGGuUCGGgCGG-UGACUGACCa -3'
miRNA:   3'- cacCUUCC-GGCCaGUCaACUGGCUGG- -5'
12592 5' -55.6 NC_003345.1 + 77025 0.66 0.774164
Target:  5'- cGUGGAGGGagucuCGGUCGGggagcUGGUCGAgCCa -3'
miRNA:   3'- -CACCUUCCg----GCCAGUCa----ACUGGCU-GG- -5'
12592 5' -55.6 NC_003345.1 + 4633 0.67 0.764347
Target:  5'- -cGGAAGGCCGuUCAacgcaAUCGACCg -3'
miRNA:   3'- caCCUUCCGGCcAGUcaac-UGGCUGG- -5'
12592 5' -55.6 NC_003345.1 + 711 0.67 0.713559
Target:  5'- -gGGGAGuauaucccCCGGcccauuUCAGggGGCCGACCg -3'
miRNA:   3'- caCCUUCc-------GGCC------AGUCaaCUGGCUGG- -5'
12592 5' -55.6 NC_003345.1 + 7510 0.68 0.703133
Target:  5'- -aGGAGGG-CGG-CGGUUGGCgGAUUg -3'
miRNA:   3'- caCCUUCCgGCCaGUCAACUGgCUGG- -5'
12592 5' -55.6 NC_003345.1 + 70769 0.69 0.639563
Target:  5'- --aGAGGG-CGGUCGGagUGACCGAgCa -3'
miRNA:   3'- cacCUUCCgGCCAGUCa-ACUGGCUgG- -5'
12592 5' -55.6 NC_003345.1 + 53360 0.69 0.618221
Target:  5'- cGUGGAuuccGGCgGGUCGGUg---CGGCCa -3'
miRNA:   3'- -CACCUu---CCGgCCAGUCAacugGCUGG- -5'
12592 5' -55.6 NC_003345.1 + 77253 0.69 0.618221
Target:  5'- cGUGGGAGaGCCGGUCuGGUucaucuggUGugUggGGCCg -3'
miRNA:   3'- -CACCUUC-CGGCCAG-UCA--------ACugG--CUGG- -5'
12592 5' -55.6 NC_003345.1 + 22433 0.7 0.586314
Target:  5'- -cGGAGGGUUcGUCGcuaUGACCGGCCu -3'
miRNA:   3'- caCCUUCCGGcCAGUca-ACUGGCUGG- -5'
12592 5' -55.6 NC_003345.1 + 53776 0.71 0.53395
Target:  5'- -cGGAGuuGGCCGGgaGGUUGugaccCCGACCg -3'
miRNA:   3'- caCCUU--CCGGCCagUCAACu----GGCUGG- -5'
12592 5' -55.6 NC_003345.1 + 468 0.71 0.523663
Target:  5'- -aGGggGGCCGGagAGacgGACgGACg -3'
miRNA:   3'- caCCuuCCGGCCagUCaa-CUGgCUGg -5'
12592 5' -55.6 NC_003345.1 + 37834 0.71 0.513454
Target:  5'- -cGGAGGGCUGGUCGGcuu-UCGACa -3'
miRNA:   3'- caCCUUCCGGCCAGUCaacuGGCUGg -5'
12592 5' -55.6 NC_003345.1 + 15309 0.72 0.435152
Target:  5'- cGUGGuu-GCCGGUCuuaucgguGUUGACCG-CCa -3'
miRNA:   3'- -CACCuucCGGCCAGu-------CAACUGGCuGG- -5'
12592 5' -55.6 NC_003345.1 + 5139 0.76 0.269639
Target:  5'- -aGGAgccaagcuuagcuugGGGCCGGUCGGUUcuUCGACCa -3'
miRNA:   3'- caCCU---------------UCCGGCCAGUCAAcuGGCUGG- -5'
12592 5' -55.6 NC_003345.1 + 8217 0.79 0.182085
Target:  5'- cGUGGAgAGGCUucgggucgucggGGUCGGUcaacUGACCGGCCu -3'
miRNA:   3'- -CACCU-UCCGG------------CCAGUCA----ACUGGCUGG- -5'
12592 5' -55.6 NC_003345.1 + 8090 1.1 0.001217
Target:  5'- uGUGGAAGGCCGGUCAGUUGACCGACCc -3'
miRNA:   3'- -CACCUUCCGGCCAGUCAACUGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.