Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12593 | 3' | -55.5 | NC_003345.1 | + | 13184 | 0.66 | 0.812598 |
Target: 5'- --gGGAUGUucgggggACGGCCCGGACuuaaccaGAACGc -3' miRNA: 3'- ccgCCUACA-------UGCUGGGCCUGc------CUUGU- -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 31834 | 0.66 | 0.83968 |
Target: 5'- gGGCGGuUGUAaGACCugccugaauugCGGAUGGAGu- -3' miRNA: 3'- -CCGCCuACAUgCUGG-----------GCCUGCCUUgu -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 43722 | 0.66 | 0.831143 |
Target: 5'- uGCGGAag-AUGAgCCGGAUGaGGACGu -3' miRNA: 3'- cCGCCUacaUGCUgGGCCUGC-CUUGU- -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 1114 | 0.67 | 0.746707 |
Target: 5'- gGGCGGAaaacagGggGCGGCCCGG-CGaAACGg -3' miRNA: 3'- -CCGCCUa-----Ca-UGCUGGGCCuGCcUUGU- -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 57980 | 0.67 | 0.746707 |
Target: 5'- cGUGGGUGgc---CCCGGACGGGAa- -3' miRNA: 3'- cCGCCUACaugcuGGGCCUGCCUUgu -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 56079 | 0.69 | 0.674664 |
Target: 5'- gGGCGGAggugGUggcucuccacACGGCgCUGGugGGggUg -3' miRNA: 3'- -CCGCCUa---CA----------UGCUG-GGCCugCCuuGu -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 68265 | 0.69 | 0.653598 |
Target: 5'- aGGUGGAuUGguaugGCGACCCGGcucaGGAGgAa -3' miRNA: 3'- -CCGCCU-ACa----UGCUGGGCCug--CCUUgU- -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 38691 | 0.74 | 0.369077 |
Target: 5'- aGCGGAUGUACGACa---ACGGAACGu -3' miRNA: 3'- cCGCCUACAUGCUGggccUGCCUUGU- -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 1381 | 0.76 | 0.313821 |
Target: 5'- aGGgGGA-GUAUGGCCCGGACaaaGAGCGa -3' miRNA: 3'- -CCgCCUaCAUGCUGGGCCUGc--CUUGU- -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 320 | 0.8 | 0.167695 |
Target: 5'- gGGCGGggGgagagACGGCCCGcGCGGGGCAg -3' miRNA: 3'- -CCGCCuaCa----UGCUGGGCcUGCCUUGU- -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 77607 | 0.8 | 0.167695 |
Target: 5'- gGGCGGggGgagagACGGCCCGcGCGGGGCAg -3' miRNA: 3'- -CCGCCuaCa----UGCUGGGCcUGCCUUGU- -5' |
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12593 | 3' | -55.5 | NC_003345.1 | + | 9612 | 1.1 | 0.001508 |
Target: 5'- uGGCGGAUGUACGACCCGGACGGAACAc -3' miRNA: 3'- -CCGCCUACAUGCUGGGCCUGCCUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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