Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12593 | 5' | -53.8 | NC_003345.1 | + | 7995 | 0.67 | 0.844369 |
Target: 5'- uGGUGGUgCuGUCCACaGAGgaugaacuUCGCCGUGu -3' miRNA: 3'- -CCAUUA-GuCGGGUG-CUC--------AGCGGCACu -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 9646 | 1.12 | 0.001547 |
Target: 5'- aGGUAAUCAGCCCACGAGUCGCCGUGAa -3' miRNA: 3'- -CCAUUAGUCGGGUGCUCAGCGGCACU- -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 12594 | 0.69 | 0.733986 |
Target: 5'- uGUAAUCGGCUCGgGAguacgcuucguagagGUCGCCGUc- -3' miRNA: 3'- cCAUUAGUCGGGUgCU---------------CAGCGGCAcu -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 14471 | 0.73 | 0.485786 |
Target: 5'- cGGgaacGUCGGCuggcgacCCACGAG-CGCCGUGGa -3' miRNA: 3'- -CCau--UAGUCG-------GGUGCUCaGCGGCACU- -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 32513 | 0.69 | 0.718399 |
Target: 5'- aGGUcGAUgaAGCCCACGuacucgucgguguAGUUGUCGUGAg -3' miRNA: 3'- -CCA-UUAg-UCGGGUGC-------------UCAGCGGCACU- -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 36832 | 0.7 | 0.666385 |
Target: 5'- cGGcUGAaCAGCCCGCuGAGUCuCCGgUGAa -3' miRNA: 3'- -CC-AUUaGUCGGGUG-CUCAGcGGC-ACU- -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 42515 | 0.71 | 0.644873 |
Target: 5'- cGGcugAAUCGGU-CGCGGGUCGCCG-GAc -3' miRNA: 3'- -CCa--UUAGUCGgGUGCUCAGCGGCaCU- -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 47375 | 0.66 | 0.891157 |
Target: 5'- uGGUGuucaaacucAUCGGCCCACGuaucgaAGUCcCCGUc- -3' miRNA: 3'- -CCAU---------UAGUCGGGUGC------UCAGcGGCAcu -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 63123 | 0.71 | 0.601791 |
Target: 5'- aGUAGUCGGCaguagcguaguCCAcCGAGUCGcCCGUGc -3' miRNA: 3'- cCAUUAGUCG-----------GGU-GCUCAGC-GGCACu -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 65535 | 0.67 | 0.835781 |
Target: 5'- aGGUAAUCA-CCaGCgGAGUCGUCGUa- -3' miRNA: 3'- -CCAUUAGUcGGgUG-CUCAGCGGCAcu -5' |
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12593 | 5' | -53.8 | NC_003345.1 | + | 73215 | 0.68 | 0.799461 |
Target: 5'- cGGga---AGCCaCACGAgGUCGuuGUGAa -3' miRNA: 3'- -CCauuagUCGG-GUGCU-CAGCggCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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