Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12595 | 3' | -53.8 | NC_003345.1 | + | 13376 | 1.12 | 0.001358 |
Target: 5'- cACCUCCCACAACACUCAGGCUGAACCu -3' miRNA: 3'- -UGGAGGGUGUUGUGAGUCCGACUUGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 50593 | 0.7 | 0.624597 |
Target: 5'- gAUUUCCaGCGGCGCUCAGGgaG-GCCa -3' miRNA: 3'- -UGGAGGgUGUUGUGAGUCCgaCuUGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 52289 | 0.7 | 0.646402 |
Target: 5'- cGCUgaCCCACGAgACUCcGGCgaGAACCc -3' miRNA: 3'- -UGGa-GGGUGUUgUGAGuCCGa-CUUGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 29607 | 0.69 | 0.678987 |
Target: 5'- cCCUCUCGcCAugAUUCAGGC--GACCg -3' miRNA: 3'- uGGAGGGU-GUugUGAGUCCGacUUGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 75291 | 0.69 | 0.678987 |
Target: 5'- cGCCUCaCCA--GCA---GGGCUGAACCg -3' miRNA: 3'- -UGGAG-GGUguUGUgagUCCGACUUGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 45733 | 0.69 | 0.700509 |
Target: 5'- uCCUCUgaACAGCAC--GGGCUGAugCa -3' miRNA: 3'- uGGAGGg-UGUUGUGagUCCGACUugG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 27788 | 0.69 | 0.721769 |
Target: 5'- cACCgCCCu--GCGCUCGGGCaguuUGAACa -3' miRNA: 3'- -UGGaGGGuguUGUGAGUCCG----ACUUGg -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 73701 | 0.69 | 0.721769 |
Target: 5'- -aCUCCUACGGC-CUCAGGCgguACa -3' miRNA: 3'- ugGAGGGUGUUGuGAGUCCGacuUGg -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 56730 | 0.68 | 0.732274 |
Target: 5'- gACCUCgCCuuCGAUacucgACUCAGGCcGAGCUu -3' miRNA: 3'- -UGGAG-GGu-GUUG-----UGAGUCCGaCUUGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 61055 | 0.68 | 0.773197 |
Target: 5'- uACCg-CCGcCGACGCUCGGGUgu-GCCg -3' miRNA: 3'- -UGGagGGU-GUUGUGAGUCCGacuUGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 14588 | 0.67 | 0.811835 |
Target: 5'- aGCgUUCCACGGCGCUCguGGGUcGccAGCCg -3' miRNA: 3'- -UGgAGGGUGUUGUGAG--UCCGaC--UUGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 33520 | 0.67 | 0.811835 |
Target: 5'- gACUUCuCCuCGGCGCUCAGGgaGucguCCu -3' miRNA: 3'- -UGGAG-GGuGUUGUGAGUCCgaCuu--GG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 23069 | 0.67 | 0.821058 |
Target: 5'- gACUUCCCGCGACugUUGGaCUucuGCCg -3' miRNA: 3'- -UGGAGGGUGUUGugAGUCcGAcu-UGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 50491 | 0.67 | 0.830085 |
Target: 5'- gGCCUCCCugAGCGCc---GCUGGAa- -3' miRNA: 3'- -UGGAGGGugUUGUGagucCGACUUgg -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 35229 | 0.66 | 0.838908 |
Target: 5'- -gUUCuCCGCgAACGCUCGGacGCUGAugCa -3' miRNA: 3'- ugGAG-GGUG-UUGUGAGUC--CGACUugG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 6363 | 0.66 | 0.855906 |
Target: 5'- cAUCUCCCACuuCcCUCGGGaguaggGAACg -3' miRNA: 3'- -UGGAGGGUGuuGuGAGUCCga----CUUGg -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 27149 | 0.66 | 0.864064 |
Target: 5'- aAUCagCCACAACauccaucucGCUCAGGUUGAcgacgacggcaACCu -3' miRNA: 3'- -UGGagGGUGUUG---------UGAGUCCGACU-----------UGG- -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 25359 | 0.66 | 0.871985 |
Target: 5'- cUCUCUCGCGGCGuCUCgauaaGGuGCUGAACa -3' miRNA: 3'- uGGAGGGUGUUGU-GAG-----UC-CGACUUGg -5' |
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12595 | 3' | -53.8 | NC_003345.1 | + | 34831 | 0.66 | 0.871985 |
Target: 5'- uCCgaagaCCCACGaaGCACUCAuGGggGAACUa -3' miRNA: 3'- uGGa----GGGUGU--UGUGAGU-CCgaCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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