Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12597 | 3' | -61.1 | NC_003345.1 | + | 9608 | 0.66 | 0.536322 |
Target: 5'- gGAGUGGcGGauGUaCGACCCgGACg -3' miRNA: 3'- gCUCACCuCCggCAcGCUGGGgCUGa -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 70380 | 0.66 | 0.497083 |
Target: 5'- uGAGaUGGAGGCUGa-CGACCuugCCGACc -3' miRNA: 3'- gCUC-ACCUCCGGCacGCUGG---GGCUGa -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 63671 | 0.66 | 0.516553 |
Target: 5'- uCGAGUGGGGGCgcuccugccgaCGUGgGACUCgucgGACa -3' miRNA: 3'- -GCUCACCUCCG-----------GCACgCUGGGg---CUGa -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 4572 | 0.66 | 0.526402 |
Target: 5'- uCGAGUGGGGuuCGauUGCGAUUgagCCGACUg -3' miRNA: 3'- -GCUCACCUCcgGC--ACGCUGG---GGCUGA- -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 18503 | 0.67 | 0.468521 |
Target: 5'- aCGAGUcgGGAGGCCaccGCGACCUCcucACUc -3' miRNA: 3'- -GCUCA--CCUCCGGca-CGCUGGGGc--UGA- -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 60678 | 0.67 | 0.477951 |
Target: 5'- aCGAGUGcGAacgacgugGGuaGUGcCGACCUCGACUu -3' miRNA: 3'- -GCUCAC-CU--------CCggCAC-GCUGGGGCUGA- -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 72426 | 0.68 | 0.405392 |
Target: 5'- aCGcGcUGGAGccGCCGggcggcgGUGGCCCCGACg -3' miRNA: 3'- -GCuC-ACCUC--CGGCa------CGCUGGGGCUGa -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 62841 | 0.69 | 0.371807 |
Target: 5'- cCGAGcuucgcccGGAGGCCa-GCGuagGCCCCGACg -3' miRNA: 3'- -GCUCa-------CCUCCGGcaCGC---UGGGGCUGa -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 53777 | 0.7 | 0.296457 |
Target: 5'- gGAGUuggccgGGAGGU--UGUGACCCCGACc -3' miRNA: 3'- gCUCA------CCUCCGgcACGCUGGGGCUGa -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 18393 | 0.71 | 0.276292 |
Target: 5'- aGAGUgaGGAGGUCGcgGUGGCcuCCCGACUc -3' miRNA: 3'- gCUCA--CCUCCGGCa-CGCUG--GGGCUGA- -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 63947 | 0.72 | 0.251129 |
Target: 5'- uGAGUgGGAGGCCGUGgGAaacguuccaCCCgGAUg -3' miRNA: 3'- gCUCA-CCUCCGGCACgCU---------GGGgCUGa -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 8086 | 0.73 | 0.196456 |
Target: 5'- cCGGuGUGGaAGGCCGgucaguugacCGACCCCGACg -3' miRNA: 3'- -GCU-CACC-UCCGGCac--------GCUGGGGCUGa -5' |
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12597 | 3' | -61.1 | NC_003345.1 | + | 14531 | 1.08 | 0.000571 |
Target: 5'- aCGAGUGGAGGCCGUGCGACCCCGACUa -3' miRNA: 3'- -GCUCACCUCCGGCACGCUGGGGCUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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