miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12599 3' -46.3 NC_003345.1 + 43213 0.66 0.999113
Target:  5'- aAGUUGUGGAUgcuggCGUUCAggCgGGCCg -3'
miRNA:   3'- cUUAGCAUUUGa----GCGAGUaaGgCUGG- -5'
12599 3' -46.3 NC_003345.1 + 43011 0.66 0.999113
Target:  5'- ---cUGUcAGCUcaCGCUCGUUCCGAa- -3'
miRNA:   3'- cuuaGCAuUUGA--GCGAGUAAGGCUgg -5'
12599 3' -46.3 NC_003345.1 + 49282 0.66 0.999053
Target:  5'- gGggUCGUGggUUcuucuaagcgaggaCGCUC---CCGACCa -3'
miRNA:   3'- -CuuAGCAUuuGA--------------GCGAGuaaGGCUGG- -5'
12599 3' -46.3 NC_003345.1 + 50487 0.66 0.998347
Target:  5'- --cUCGaAGACUgGCUCGUUUCGGgUg -3'
miRNA:   3'- cuuAGCaUUUGAgCGAGUAAGGCUgG- -5'
12599 3' -46.3 NC_003345.1 + 14275 0.67 0.997991
Target:  5'- --cUCGUAGuucACucauaggcugaaUCGCUCGUUCC-ACCg -3'
miRNA:   3'- cuuAGCAUU---UG------------AGCGAGUAAGGcUGG- -5'
12599 3' -46.3 NC_003345.1 + 36050 0.67 0.997573
Target:  5'- --uUCGUGAACUUGCUCAagUCUauUCa -3'
miRNA:   3'- cuuAGCAUUUGAGCGAGUa-AGGcuGG- -5'
12599 3' -46.3 NC_003345.1 + 46988 0.67 0.997573
Target:  5'- --uUCGcAAACUCGCccUCGUUUCGcuucGCCa -3'
miRNA:   3'- cuuAGCaUUUGAGCG--AGUAAGGC----UGG- -5'
12599 3' -46.3 NC_003345.1 + 51013 0.67 0.997573
Target:  5'- --uUCGUGAACUucCGCgCGUUCaCGuCCa -3'
miRNA:   3'- cuuAGCAUUUGA--GCGaGUAAG-GCuGG- -5'
12599 3' -46.3 NC_003345.1 + 16112 0.67 0.997085
Target:  5'- --uUCGUGAGCgcCGCUgAUUCUGucaACCu -3'
miRNA:   3'- cuuAGCAUUUGa-GCGAgUAAGGC---UGG- -5'
12599 3' -46.3 NC_003345.1 + 12380 0.67 0.996518
Target:  5'- --uUCGauGAgUCGUUCAUcggcUCCGGCCc -3'
miRNA:   3'- cuuAGCauUUgAGCGAGUA----AGGCUGG- -5'
12599 3' -46.3 NC_003345.1 + 73468 0.67 0.996518
Target:  5'- --uUCGaGAACgCGgUCGUUCaCGACCu -3'
miRNA:   3'- cuuAGCaUUUGaGCgAGUAAG-GCUGG- -5'
12599 3' -46.3 NC_003345.1 + 76204 0.68 0.995111
Target:  5'- uGAUgGUGGGCaCGCUCAUUCguGCCg -3'
miRNA:   3'- cUUAgCAUUUGaGCGAGUAAGgcUGG- -5'
12599 3' -46.3 NC_003345.1 + 63233 0.68 0.993273
Target:  5'- gGAGUC---AGCUCGCUCAggUCUucguaGACCa -3'
miRNA:   3'- -CUUAGcauUUGAGCGAGUa-AGG-----CUGG- -5'
12599 3' -46.3 NC_003345.1 + 72016 0.68 0.992167
Target:  5'- aGAAUCGUcacgGGACUCGgg-AUUCCGGCa -3'
miRNA:   3'- -CUUAGCA----UUUGAGCgagUAAGGCUGg -5'
12599 3' -46.3 NC_003345.1 + 75573 0.68 0.992167
Target:  5'- gGggUCG-AAGCUCgGCUCAUcgCCGuCUu -3'
miRNA:   3'- -CuuAGCaUUUGAG-CGAGUAa-GGCuGG- -5'
12599 3' -46.3 NC_003345.1 + 45041 0.69 0.989524
Target:  5'- ---gCGUGAACguacuUCGCUCGaaguUUCCGuACCu -3'
miRNA:   3'- cuuaGCAUUUG-----AGCGAGU----AAGGC-UGG- -5'
12599 3' -46.3 NC_003345.1 + 63306 0.69 0.986232
Target:  5'- cGGAUgCGUc--CUCGCUCA--CCGGCCc -3'
miRNA:   3'- -CUUA-GCAuuuGAGCGAGUaaGGCUGG- -5'
12599 3' -46.3 NC_003345.1 + 30047 0.69 0.984313
Target:  5'- cGAAUCGUucgacaacCUCGCUucCAUcCUGACCg -3'
miRNA:   3'- -CUUAGCAuuu-----GAGCGA--GUAaGGCUGG- -5'
12599 3' -46.3 NC_003345.1 + 22137 0.69 0.984313
Target:  5'- ---cCGU-AGCUgGCUCGUaCUGACCg -3'
miRNA:   3'- cuuaGCAuUUGAgCGAGUAaGGCUGG- -5'
12599 3' -46.3 NC_003345.1 + 39451 0.7 0.973689
Target:  5'- ------cAAGCUCGUUCAggcgauacuccuucUUCCGACCa -3'
miRNA:   3'- cuuagcaUUUGAGCGAGU--------------AAGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.