Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
126 | 3' | -59 | AC_000006.1 | + | 12383 | 0.66 | 0.385704 |
Target: 5'- gGGCG-UGCAGGcGCCcguGGgCGaCCGGUCg -3' miRNA: 3'- -CCGCgACGUUU-CGG---UCgGCaGGCCAG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 13178 | 0.66 | 0.37669 |
Target: 5'- -uCGCUGCugcAGCC-GCCG-CgGGUCa -3' miRNA: 3'- ccGCGACGuu-UCGGuCGGCaGgCCAG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 20892 | 0.66 | 0.375797 |
Target: 5'- --aGCUGUAaaucugcuuGAGCCGGCgGUCCgagaacccaaaggGGUCg -3' miRNA: 3'- ccgCGACGU---------UUCGGUCGgCAGG-------------CCAG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 11885 | 0.66 | 0.36782 |
Target: 5'- uGCGUUGCAucgcAGCCucccAGUCGUCCGa-- -3' miRNA: 3'- cCGCGACGUu---UCGG----UCGGCAGGCcag -5' |
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126 | 3' | -59 | AC_000006.1 | + | 16967 | 0.66 | 0.356505 |
Target: 5'- cGGCGCUGCGAcGCCugcagcgcaacggaAGCUauGcCCGGg- -3' miRNA: 3'- -CCGCGACGUUuCGG--------------UCGG--CaGGCCag -5' |
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126 | 3' | -59 | AC_000006.1 | + | 13064 | 0.67 | 0.341246 |
Target: 5'- uGGCGCuuuUGCAAGGUCGgugaaaacaccgcGCUGUCCacGUCg -3' miRNA: 3'- -CCGCG---ACGUUUCGGU-------------CGGCAGGc-CAG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 11623 | 0.67 | 0.333795 |
Target: 5'- gGGCGgacCUGCAuuGgCAGCCGagCCGG-Cg -3' miRNA: 3'- -CCGC---GACGUuuCgGUCGGCa-GGCCaG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 10718 | 0.67 | 0.302134 |
Target: 5'- cGGCGcCUGCuacGGCC-GCgGUCgCGGUg -3' miRNA: 3'- -CCGC-GACGuu-UCGGuCGgCAG-GCCAg -5' |
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126 | 3' | -59 | AC_000006.1 | + | 21420 | 0.67 | 0.302134 |
Target: 5'- cGGCucauCUGCAGGGCgccCAGCaUGUCCGGg- -3' miRNA: 3'- -CCGc---GACGUUUCG---GUCG-GCAGGCCag -5' |
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126 | 3' | -59 | AC_000006.1 | + | 11216 | 0.68 | 0.293843 |
Target: 5'- aGGaacaGCUGCGccgucagAGGCUuGCUGUCCGGg- -3' miRNA: 3'- -CCg---CGACGU-------UUCGGuCGGCAGGCCag -5' |
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126 | 3' | -59 | AC_000006.1 | + | 23640 | 0.69 | 0.245866 |
Target: 5'- cGGCGCaaGCucauGCUGGCCGUggucCUGGUCa -3' miRNA: 3'- -CCGCGa-CGuuu-CGGUCGGCA----GGCCAG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 16117 | 0.69 | 0.245866 |
Target: 5'- cGGUGCUGCu--GCCgAGCCG-CgGGaUCa -3' miRNA: 3'- -CCGCGACGuuuCGG-UCGGCaGgCC-AG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 19980 | 0.7 | 0.209593 |
Target: 5'- cGGuCGUUGCcGGGCCAGCUGaCCGaggaGUCg -3' miRNA: 3'- -CC-GCGACGuUUCGGUCGGCaGGC----CAG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 12169 | 0.71 | 0.182981 |
Target: 5'- cGCGCUGCGccacGGCUucgcGCCGUCCG-UCa -3' miRNA: 3'- cCGCGACGUu---UCGGu---CGGCAGGCcAG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 13229 | 0.71 | 0.182981 |
Target: 5'- cGGCgGCUGCAGcAGCgAGUCGUUCaGGUa -3' miRNA: 3'- -CCG-CGACGUU-UCGgUCGGCAGG-CCAg -5' |
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126 | 3' | -59 | AC_000006.1 | + | 16868 | 0.71 | 0.173199 |
Target: 5'- aGGCGcCUGCGcauGGCCcGCCG-CCGG-Cg -3' miRNA: 3'- -CCGC-GACGUu--UCGGuCGGCaGGCCaG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 2288 | 0.71 | 0.168485 |
Target: 5'- gGGCGCUuGCGAuucaucAGaCUGGCCGUCagcuCGGUCa -3' miRNA: 3'- -CCGCGA-CGUU------UC-GGUCGGCAG----GCCAG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 9989 | 0.72 | 0.159401 |
Target: 5'- aGCGCUGgGuGGCCGGCgCGcCCGGg- -3' miRNA: 3'- cCGCGACgUuUCGGUCG-GCaGGCCag -5' |
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126 | 3' | -59 | AC_000006.1 | + | 30338 | 0.77 | 0.059824 |
Target: 5'- uGCGCUGCucgGAGGCCuGGCCGUCCaucucgaGGUCc -3' miRNA: 3'- cCGCGACG---UUUCGG-UCGGCAGG-------CCAG- -5' |
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126 | 3' | -59 | AC_000006.1 | + | 11789 | 1.11 | 0.000147 |
Target: 5'- cGGCGCUGCAAAGCCAGCCGUCCGGUCu -3' miRNA: 3'- -CCGCGACGUUUCGGUCGGCAGGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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