miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
126 3' -59 AC_000006.1 + 12383 0.66 0.385704
Target:  5'- gGGCG-UGCAGGcGCCcguGGgCGaCCGGUCg -3'
miRNA:   3'- -CCGCgACGUUU-CGG---UCgGCaGGCCAG- -5'
126 3' -59 AC_000006.1 + 13178 0.66 0.37669
Target:  5'- -uCGCUGCugcAGCC-GCCG-CgGGUCa -3'
miRNA:   3'- ccGCGACGuu-UCGGuCGGCaGgCCAG- -5'
126 3' -59 AC_000006.1 + 20892 0.66 0.375797
Target:  5'- --aGCUGUAaaucugcuuGAGCCGGCgGUCCgagaacccaaaggGGUCg -3'
miRNA:   3'- ccgCGACGU---------UUCGGUCGgCAGG-------------CCAG- -5'
126 3' -59 AC_000006.1 + 11885 0.66 0.36782
Target:  5'- uGCGUUGCAucgcAGCCucccAGUCGUCCGa-- -3'
miRNA:   3'- cCGCGACGUu---UCGG----UCGGCAGGCcag -5'
126 3' -59 AC_000006.1 + 16967 0.66 0.356505
Target:  5'- cGGCGCUGCGAcGCCugcagcgcaacggaAGCUauGcCCGGg- -3'
miRNA:   3'- -CCGCGACGUUuCGG--------------UCGG--CaGGCCag -5'
126 3' -59 AC_000006.1 + 13064 0.67 0.341246
Target:  5'- uGGCGCuuuUGCAAGGUCGgugaaaacaccgcGCUGUCCacGUCg -3'
miRNA:   3'- -CCGCG---ACGUUUCGGU-------------CGGCAGGc-CAG- -5'
126 3' -59 AC_000006.1 + 11623 0.67 0.333795
Target:  5'- gGGCGgacCUGCAuuGgCAGCCGagCCGG-Cg -3'
miRNA:   3'- -CCGC---GACGUuuCgGUCGGCa-GGCCaG- -5'
126 3' -59 AC_000006.1 + 21420 0.67 0.302134
Target:  5'- cGGCucauCUGCAGGGCgccCAGCaUGUCCGGg- -3'
miRNA:   3'- -CCGc---GACGUUUCG---GUCG-GCAGGCCag -5'
126 3' -59 AC_000006.1 + 10718 0.67 0.302134
Target:  5'- cGGCGcCUGCuacGGCC-GCgGUCgCGGUg -3'
miRNA:   3'- -CCGC-GACGuu-UCGGuCGgCAG-GCCAg -5'
126 3' -59 AC_000006.1 + 11216 0.68 0.293843
Target:  5'- aGGaacaGCUGCGccgucagAGGCUuGCUGUCCGGg- -3'
miRNA:   3'- -CCg---CGACGU-------UUCGGuCGGCAGGCCag -5'
126 3' -59 AC_000006.1 + 16117 0.69 0.245866
Target:  5'- cGGUGCUGCu--GCCgAGCCG-CgGGaUCa -3'
miRNA:   3'- -CCGCGACGuuuCGG-UCGGCaGgCC-AG- -5'
126 3' -59 AC_000006.1 + 23640 0.69 0.245866
Target:  5'- cGGCGCaaGCucauGCUGGCCGUggucCUGGUCa -3'
miRNA:   3'- -CCGCGa-CGuuu-CGGUCGGCA----GGCCAG- -5'
126 3' -59 AC_000006.1 + 19980 0.7 0.209593
Target:  5'- cGGuCGUUGCcGGGCCAGCUGaCCGaggaGUCg -3'
miRNA:   3'- -CC-GCGACGuUUCGGUCGGCaGGC----CAG- -5'
126 3' -59 AC_000006.1 + 13229 0.71 0.182981
Target:  5'- cGGCgGCUGCAGcAGCgAGUCGUUCaGGUa -3'
miRNA:   3'- -CCG-CGACGUU-UCGgUCGGCAGG-CCAg -5'
126 3' -59 AC_000006.1 + 12169 0.71 0.182981
Target:  5'- cGCGCUGCGccacGGCUucgcGCCGUCCG-UCa -3'
miRNA:   3'- cCGCGACGUu---UCGGu---CGGCAGGCcAG- -5'
126 3' -59 AC_000006.1 + 16868 0.71 0.173199
Target:  5'- aGGCGcCUGCGcauGGCCcGCCG-CCGG-Cg -3'
miRNA:   3'- -CCGC-GACGUu--UCGGuCGGCaGGCCaG- -5'
126 3' -59 AC_000006.1 + 2288 0.71 0.168485
Target:  5'- gGGCGCUuGCGAuucaucAGaCUGGCCGUCagcuCGGUCa -3'
miRNA:   3'- -CCGCGA-CGUU------UC-GGUCGGCAG----GCCAG- -5'
126 3' -59 AC_000006.1 + 9989 0.72 0.159401
Target:  5'- aGCGCUGgGuGGCCGGCgCGcCCGGg- -3'
miRNA:   3'- cCGCGACgUuUCGGUCG-GCaGGCCag -5'
126 3' -59 AC_000006.1 + 30338 0.77 0.059824
Target:  5'- uGCGCUGCucgGAGGCCuGGCCGUCCaucucgaGGUCc -3'
miRNA:   3'- cCGCGACG---UUUCGG-UCGGCAGG-------CCAG- -5'
126 3' -59 AC_000006.1 + 11789 1.11 0.000147
Target:  5'- cGGCGCUGCAAAGCCAGCCGUCCGGUCu -3'
miRNA:   3'- -CCGCGACGUUUCGGUCGGCAGGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.