miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12600 3' -51.7 NC_003345.1 + 11300 0.66 0.961981
Target:  5'- aGGUGAaaGACgGACGACCGUgGACUGu- -3'
miRNA:   3'- gUCAUUg-CUG-CUGCUGGCG-CUGAUgg -5'
12600 3' -51.7 NC_003345.1 + 46907 0.66 0.961981
Target:  5'- -cGUGACGccuuUGACGACgGCGAggGCg -3'
miRNA:   3'- guCAUUGCu---GCUGCUGgCGCUgaUGg -5'
12600 3' -51.7 NC_003345.1 + 10455 0.66 0.959744
Target:  5'- --cUGACGAccuguuuccguucccCGGauACCGUGACUACCa -3'
miRNA:   3'- gucAUUGCU---------------GCUgcUGGCGCUGAUGG- -5'
12600 3' -51.7 NC_003345.1 + 46474 0.66 0.958591
Target:  5'- ---cAGCGGCGACcuuucgacucgggaGGCCGUggagugguacuucgaGACUGCCg -3'
miRNA:   3'- gucaUUGCUGCUG--------------CUGGCG---------------CUGAUGG- -5'
12600 3' -51.7 NC_003345.1 + 69205 0.66 0.958202
Target:  5'- cCGG-AACGACccguGCGAaggaCGaCGACUACCu -3'
miRNA:   3'- -GUCaUUGCUGc---UGCUg---GC-GCUGAUGG- -5'
12600 3' -51.7 NC_003345.1 + 9806 0.66 0.958202
Target:  5'- aCAGcGACGuugaacaGACGACCGaagaagaaGACUACg -3'
miRNA:   3'- -GUCaUUGCug-----CUGCUGGCg-------CUGAUGg -5'
12600 3' -51.7 NC_003345.1 + 43862 0.66 0.956621
Target:  5'- cCGGUuACaGCGACGACUauauugacguauuCGACUACCc -3'
miRNA:   3'- -GUCAuUGcUGCUGCUGGc------------GCUGAUGG- -5'
12600 3' -51.7 NC_003345.1 + 66105 0.66 0.955816
Target:  5'- gCAGUAuuuCGACGugGACauuccgaGCgguugggagcgucccGACUACUa -3'
miRNA:   3'- -GUCAUu--GCUGCugCUGg------CG---------------CUGAUGG- -5'
12600 3' -51.7 NC_003345.1 + 68521 0.66 0.954174
Target:  5'- uCGGUGucuCGAUGACGAacCCGCucGCcGCCg -3'
miRNA:   3'- -GUCAUu--GCUGCUGCU--GGCGc-UGaUGG- -5'
12600 3' -51.7 NC_003345.1 + 41102 0.66 0.954174
Target:  5'- ---gGACGACcuCGACCGaGACUACg -3'
miRNA:   3'- gucaUUGCUGcuGCUGGCgCUGAUGg -5'
12600 3' -51.7 NC_003345.1 + 63379 0.66 0.954174
Target:  5'- -cGUAACGuccACGaggucaaccGCGACCGCGuagACCg -3'
miRNA:   3'- guCAUUGC---UGC---------UGCUGGCGCugaUGG- -5'
12600 3' -51.7 NC_003345.1 + 34522 0.66 0.949449
Target:  5'- gCAG-AACG-CGGCGAguccgguCUGCGACUGuCCc -3'
miRNA:   3'- -GUCaUUGCuGCUGCU-------GGCGCUGAU-GG- -5'
12600 3' -51.7 NC_003345.1 + 63594 0.66 0.945351
Target:  5'- aAGUGACGGagagcgccgaguUGACGuuCGUGACaaUACCg -3'
miRNA:   3'- gUCAUUGCU------------GCUGCugGCGCUG--AUGG- -5'
12600 3' -51.7 NC_003345.1 + 54583 0.66 0.945351
Target:  5'- --uUAACGACGACGGCUcuuucgacgGCGA-UACUg -3'
miRNA:   3'- gucAUUGCUGCUGCUGG---------CGCUgAUGG- -5'
12600 3' -51.7 NC_003345.1 + 3597 0.66 0.945351
Target:  5'- uCGGgu-CGAUGACcACCGUGAUgagcugGCCg -3'
miRNA:   3'- -GUCauuGCUGCUGcUGGCGCUGa-----UGG- -5'
12600 3' -51.7 NC_003345.1 + 20207 0.67 0.930147
Target:  5'- aUAGaugGACGACGACGACgcucccuccggUGgGGCcGCCg -3'
miRNA:   3'- -GUCa--UUGCUGCUGCUG-----------GCgCUGaUGG- -5'
12600 3' -51.7 NC_003345.1 + 51926 0.67 0.924546
Target:  5'- uUAGUGACGGC-ACGGaacuucucucgUCGUGgACUGCCg -3'
miRNA:   3'- -GUCAUUGCUGcUGCU-----------GGCGC-UGAUGG- -5'
12600 3' -51.7 NC_003345.1 + 33343 0.67 0.924546
Target:  5'- ----uACGACGGCGuguuCCGCGAgCUugUg -3'
miRNA:   3'- gucauUGCUGCUGCu---GGCGCU-GAugG- -5'
12600 3' -51.7 NC_003345.1 + 7360 0.67 0.918679
Target:  5'- aAGUGGCGGUGuaaaGACUGCGGgaGCCg -3'
miRNA:   3'- gUCAUUGCUGCug--CUGGCGCUgaUGG- -5'
12600 3' -51.7 NC_003345.1 + 7826 0.68 0.912545
Target:  5'- aAGUAGCGAcugaCGACGACCc---CUGCCc -3'
miRNA:   3'- gUCAUUGCU----GCUGCUGGcgcuGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.