Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12600 | 5' | -54.7 | NC_003345.1 | + | 69818 | 0.67 | 0.769412 |
Target: 5'- cGGGGUCGAgaguuucaccgucGCGGUUcagCGGCGCGu- -3' miRNA: 3'- -CCCCGGCUa------------CGCCAGaa-GUUGCGUua -5' |
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12600 | 5' | -54.7 | NC_003345.1 | + | 29322 | 0.67 | 0.750205 |
Target: 5'- cGGGGCUGAUuucuuccuuguaGUGGUCUUgcuccucgggugaaCAGuCGCAAUg -3' miRNA: 3'- -CCCCGGCUA------------CGCCAGAA--------------GUU-GCGUUA- -5' |
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12600 | 5' | -54.7 | NC_003345.1 | + | 74368 | 0.68 | 0.722205 |
Target: 5'- cGGGGCUGGUaCGGUCgaaagagcgUCAGCGg--- -3' miRNA: 3'- -CCCCGGCUAcGCCAGa--------AGUUGCguua -5' |
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12600 | 5' | -54.7 | NC_003345.1 | + | 15318 | 0.68 | 0.722205 |
Target: 5'- cGGGGCCGAcgugguUGcCGGUCUUau-CGguGUu -3' miRNA: 3'- -CCCCGGCU------AC-GCCAGAAguuGCguUA- -5' |
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12600 | 5' | -54.7 | NC_003345.1 | + | 5122 | 0.72 | 0.477792 |
Target: 5'- uGGGGCCGGU-CGGuUCUUCGAC-CAc- -3' miRNA: 3'- -CCCCGGCUAcGCC-AGAAGUUGcGUua -5' |
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12600 | 5' | -54.7 | NC_003345.1 | + | 65050 | 0.76 | 0.302356 |
Target: 5'- cGGGGaaGggGUGGUCUUCAACGUc-- -3' miRNA: 3'- -CCCCggCuaCGCCAGAAGUUGCGuua -5' |
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12600 | 5' | -54.7 | NC_003345.1 | + | 19872 | 1.07 | 0.00218 |
Target: 5'- uGGGGCCGAUGCGGUCUUCAACGCAAUc -3' miRNA: 3'- -CCCCGGCUACGCCAGAAGUUGCGUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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