miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12601 5' -55.2 NC_003345.1 + 53854 0.66 0.794571
Target:  5'- -cCGGUGAGCUggUCGuGaCCGGggGa -3'
miRNA:   3'- aaGCUACUUGGuuGGC-CgGGCCuuCa -5'
12601 5' -55.2 NC_003345.1 + 14315 0.67 0.74479
Target:  5'- cUCGAUGG--CGACCGGCagaCGGAAa- -3'
miRNA:   3'- aAGCUACUugGUUGGCCGg--GCCUUca -5'
12601 5' -55.2 NC_003345.1 + 10410 0.67 0.734457
Target:  5'- aUUCGAgGAACagaGACgGGCuUCGGGAGUa -3'
miRNA:   3'- -AAGCUaCUUGg--UUGgCCG-GGCCUUCA- -5'
12601 5' -55.2 NC_003345.1 + 33663 0.67 0.713504
Target:  5'- cUCGAUGAACCAGCgGgaguGCCUcGAAGc -3'
miRNA:   3'- aAGCUACUUGGUUGgC----CGGGcCUUCa -5'
12601 5' -55.2 NC_003345.1 + 10556 0.69 0.584158
Target:  5'- aUCGAcGGGCCGACCGGgaUUgGGAAGUc -3'
miRNA:   3'- aAGCUaCUUGGUUGGCC--GGgCCUUCA- -5'
12601 5' -55.2 NC_003345.1 + 2883 0.7 0.573418
Target:  5'- aUCGG-GAACCu-CCGGCUCGGGAa- -3'
miRNA:   3'- aAGCUaCUUGGuuGGCCGGGCCUUca -5'
12601 5' -55.2 NC_003345.1 + 51434 0.7 0.552085
Target:  5'- -gCGcugGAGCCu-CCGGCCCGGAGa- -3'
miRNA:   3'- aaGCua-CUUGGuuGGCCGGGCCUUca -5'
12601 5' -55.2 NC_003345.1 + 47018 0.7 0.545731
Target:  5'- -aCGAUGAACCGACCaauauccggguggucGGCgCGGAGa- -3'
miRNA:   3'- aaGCUACUUGGUUGG---------------CCGgGCCUUca -5'
12601 5' -55.2 NC_003345.1 + 289 0.72 0.440461
Target:  5'- --gGGgcagGGGCCGACCGGCCCGaGAGa -3'
miRNA:   3'- aagCUa---CUUGGUUGGCCGGGCcUUCa -5'
12601 5' -55.2 NC_003345.1 + 77576 0.72 0.440461
Target:  5'- --gGGgcagGGGCCGACCGGCCCGaGAGa -3'
miRNA:   3'- aagCUa---CUUGGUUGGCCGGGCcUUCa -5'
12601 5' -55.2 NC_003345.1 + 5024 0.74 0.359356
Target:  5'- gUCGAaGAACCGACCGGCCCc----- -3'
miRNA:   3'- aAGCUaCUUGGUUGGCCGGGccuuca -5'
12601 5' -55.2 NC_003345.1 + 20255 1.05 0.002551
Target:  5'- cUUCGAUGAACCAACCGGCCCGGAAGUa -3'
miRNA:   3'- -AAGCUACUUGGUUGGCCGGGCCUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.