miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12602 3' -47.7 NC_003345.1 + 26166 0.66 0.99718
Target:  5'- cCCGGucaACUc-CCUGCGuGUGguAGUGCCc -3'
miRNA:   3'- -GGUC---UGAaaGGAUGC-CGCguUUAUGG- -5'
12602 3' -47.7 NC_003345.1 + 39403 0.66 0.99718
Target:  5'- aCCAGAUUUgUUCgACGGCGCu----CCc -3'
miRNA:   3'- -GGUCUGAA-AGGaUGCCGCGuuuauGG- -5'
12602 3' -47.7 NC_003345.1 + 36710 0.66 0.996862
Target:  5'- -aGGACgUUCCgacgaccggcuaccACGGCGUGAAcUACCa -3'
miRNA:   3'- ggUCUGaAAGGa-------------UGCCGCGUUU-AUGG- -5'
12602 3' -47.7 NC_003345.1 + 31311 0.66 0.996635
Target:  5'- --cGACUUUCCg--GGCGCAG--GCUc -3'
miRNA:   3'- gguCUGAAAGGaugCCGCGUUuaUGG- -5'
12602 3' -47.7 NC_003345.1 + 21099 0.66 0.996635
Target:  5'- aCCGGGucgUCCUACGG-GCAGu--CCc -3'
miRNA:   3'- -GGUCUgaaAGGAUGCCgCGUUuauGG- -5'
12602 3' -47.7 NC_003345.1 + 30262 0.67 0.992462
Target:  5'- aUAGuCacgUCCUGCGGCGgAGAggauaUGCCc -3'
miRNA:   3'- gGUCuGaa-AGGAUGCCGCgUUU-----AUGG- -5'
12602 3' -47.7 NC_003345.1 + 67980 0.67 0.992349
Target:  5'- gCCGGGCUUcuuaaUCCgGCGGaguGCGuucuccauauuccGAUACCa -3'
miRNA:   3'- -GGUCUGAA-----AGGaUGCCg--CGU-------------UUAUGG- -5'
12602 3' -47.7 NC_003345.1 + 29009 0.67 0.989929
Target:  5'- aCCGGcccGCUcugUCaCUACGGUcacgGCAAGUGCUu -3'
miRNA:   3'- -GGUC---UGAa--AG-GAUGCCG----CGUUUAUGG- -5'
12602 3' -47.7 NC_003345.1 + 46265 0.67 0.989929
Target:  5'- aCCAGAUgggcguccCCUACGGCacGCAGGacuCCu -3'
miRNA:   3'- -GGUCUGaaa-----GGAUGCCG--CGUUUau-GG- -5'
12602 3' -47.7 NC_003345.1 + 53544 0.67 0.989929
Target:  5'- aCuGACgaugUUCUUcACGGCGaaauCGAGUACCg -3'
miRNA:   3'- gGuCUGa---AAGGA-UGCCGC----GUUUAUGG- -5'
12602 3' -47.7 NC_003345.1 + 42135 0.67 0.989052
Target:  5'- aCCAcGACUUcuuccgaaacaccgCCUACGGagggaugaGCGAAUACUu -3'
miRNA:   3'- -GGU-CUGAAa-------------GGAUGCCg-------CGUUUAUGG- -5'
12602 3' -47.7 NC_003345.1 + 23893 0.68 0.97825
Target:  5'- gCCGGACgcUCC-ACGGaggGCAAGcACCc -3'
miRNA:   3'- -GGUCUGaaAGGaUGCCg--CGUUUaUGG- -5'
12602 3' -47.7 NC_003345.1 + 29951 0.69 0.966219
Target:  5'- aCGGACUcggaacaaUCUACGacguacugaaGCGCGAAUACCg -3'
miRNA:   3'- gGUCUGAaa------GGAUGC----------CGCGUUUAUGG- -5'
12602 3' -47.7 NC_003345.1 + 66442 0.7 0.962595
Target:  5'- aCCGG-CgugCUUACGGCGCG-AUGCg -3'
miRNA:   3'- -GGUCuGaaaGGAUGCCGCGUuUAUGg -5'
12602 3' -47.7 NC_003345.1 + 50599 0.73 0.849859
Target:  5'- gCAGAUgaUUUCCaGCGGCGCucagggagGCCa -3'
miRNA:   3'- gGUCUG--AAAGGaUGCCGCGuuua----UGG- -5'
12602 3' -47.7 NC_003345.1 + 20872 1.15 0.004079
Target:  5'- uCCAGACUUUCCUACGGCGCAAAUACCu -3'
miRNA:   3'- -GGUCUGAAAGGAUGCCGCGUUUAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.