Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12602 | 3' | -47.7 | NC_003345.1 | + | 26166 | 0.66 | 0.99718 |
Target: 5'- cCCGGucaACUc-CCUGCGuGUGguAGUGCCc -3' miRNA: 3'- -GGUC---UGAaaGGAUGC-CGCguUUAUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 39403 | 0.66 | 0.99718 |
Target: 5'- aCCAGAUUUgUUCgACGGCGCu----CCc -3' miRNA: 3'- -GGUCUGAA-AGGaUGCCGCGuuuauGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 36710 | 0.66 | 0.996862 |
Target: 5'- -aGGACgUUCCgacgaccggcuaccACGGCGUGAAcUACCa -3' miRNA: 3'- ggUCUGaAAGGa-------------UGCCGCGUUU-AUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 31311 | 0.66 | 0.996635 |
Target: 5'- --cGACUUUCCg--GGCGCAG--GCUc -3' miRNA: 3'- gguCUGAAAGGaugCCGCGUUuaUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 21099 | 0.66 | 0.996635 |
Target: 5'- aCCGGGucgUCCUACGG-GCAGu--CCc -3' miRNA: 3'- -GGUCUgaaAGGAUGCCgCGUUuauGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 30262 | 0.67 | 0.992462 |
Target: 5'- aUAGuCacgUCCUGCGGCGgAGAggauaUGCCc -3' miRNA: 3'- gGUCuGaa-AGGAUGCCGCgUUU-----AUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 67980 | 0.67 | 0.992349 |
Target: 5'- gCCGGGCUUcuuaaUCCgGCGGaguGCGuucuccauauuccGAUACCa -3' miRNA: 3'- -GGUCUGAA-----AGGaUGCCg--CGU-------------UUAUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 29009 | 0.67 | 0.989929 |
Target: 5'- aCCGGcccGCUcugUCaCUACGGUcacgGCAAGUGCUu -3' miRNA: 3'- -GGUC---UGAa--AG-GAUGCCG----CGUUUAUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 46265 | 0.67 | 0.989929 |
Target: 5'- aCCAGAUgggcguccCCUACGGCacGCAGGacuCCu -3' miRNA: 3'- -GGUCUGaaa-----GGAUGCCG--CGUUUau-GG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 53544 | 0.67 | 0.989929 |
Target: 5'- aCuGACgaugUUCUUcACGGCGaaauCGAGUACCg -3' miRNA: 3'- gGuCUGa---AAGGA-UGCCGC----GUUUAUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 42135 | 0.67 | 0.989052 |
Target: 5'- aCCAcGACUUcuuccgaaacaccgCCUACGGagggaugaGCGAAUACUu -3' miRNA: 3'- -GGU-CUGAAa-------------GGAUGCCg-------CGUUUAUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 23893 | 0.68 | 0.97825 |
Target: 5'- gCCGGACgcUCC-ACGGaggGCAAGcACCc -3' miRNA: 3'- -GGUCUGaaAGGaUGCCg--CGUUUaUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 29951 | 0.69 | 0.966219 |
Target: 5'- aCGGACUcggaacaaUCUACGacguacugaaGCGCGAAUACCg -3' miRNA: 3'- gGUCUGAaa------GGAUGC----------CGCGUUUAUGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 66442 | 0.7 | 0.962595 |
Target: 5'- aCCGG-CgugCUUACGGCGCG-AUGCg -3' miRNA: 3'- -GGUCuGaaaGGAUGCCGCGUuUAUGg -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 50599 | 0.73 | 0.849859 |
Target: 5'- gCAGAUgaUUUCCaGCGGCGCucagggagGCCa -3' miRNA: 3'- gGUCUG--AAAGGaUGCCGCGuuua----UGG- -5' |
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12602 | 3' | -47.7 | NC_003345.1 | + | 20872 | 1.15 | 0.004079 |
Target: 5'- uCCAGACUUUCCUACGGCGCAAAUACCu -3' miRNA: 3'- -GGUCUGAAAGGAUGCCGCGUUUAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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